Rafal Rak

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 7

Top Topics

Preferential Attachment

Top Venues

Database J. Biol. Databases Curation

J. Cheminformatics

Publications

Ewa Rak, Jaromir Sarzynski, Rafal Rak
Effectiveness of an ensemble technique based on the distributivity equation in detecting suspicious network activity. Fuzzy Sets Syst. 488 (2024)
Rafal Rak, Ewa Rak
Multifractality of Complex Networks Is Also Due to Geometry: A Geometric Sandbox Algorithm. Entropy 25 (9) (2023)
Barbara Pekala, Ewa Rak, Bogdan Kwiatkowski, Adam Szczur, Rafal Rak
The use of concave and convex functions to optimize the feed-rate of numerically controlled machine tools. FUZZ-IEEE (2020)
Rafal Rak, Ewa Rak
The Fractional Preferential Attachment Scale-Free Network Model. Entropy 22 (5) (2020)
Rafal Rak, Ewa Rak
The Fractional Preferential Attachment Scale-Free Network Model. CoRR (2020)
Rafal Rak, Jaroslaw Kwapien, Stanislaw Drozdz, Pawel Oswiecimka, Pawel Zieba
Universal features of mountain ridge patterns on Earth. CoRR (2018)
Stanislaw Drozdz, Rafal Kowalski, Pawel Oswiecimka, Rafal Rak, Robert Gebarowski
Dynamical Variety of Shapes in Financial Multifractality. Complex. 2018 (2018)
Riza Theresa Batista-Navarro, Rafal Rak, Sophia Ananiadou
Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics. J. Cheminformatics 7 (S-1) (2015)
Xiao Fu, Riza Theresa Batista-Navarro, Rafal Rak, Sophia Ananiadou
Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows. J. Biomed. Semant. 6 (2015)
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Jun'ichi Tsujii, Sophia Ananiadou
Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013. BMC Bioinform. 16 (S10) (2015)
Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M. Lowe, Roger A. Sayle, Riza Theresa Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sérgio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, S. V. Ramanan, P. Senthil Nathan, Slavko Zitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A. Akhondi, Jan A. Kors, Shuo Xu, Xin An, Utpal Kumar Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M. Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C. Lee Giles, Hongfang Liu, Ravikumar Komandur Elayavilli, Andre Lamurias, Francisco M. Couto, Hong-Jie Dai, Richard Tzong-Han Tsai, Caglar Ata, Tolga Can, Anabel Usie, Rui Alves, Isabel Segura-Bedmar, Paloma Martínez, Julen Oyarzabal, Alfonso Valencia
The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics 7 (S-1) (2015)
Rafal Rak, Riza Theresa Batista-Navarro, Jacob Carter, Andrew Rowley, Sophia Ananiadou
Processing biological literature with customizable Web services supporting interoperable formats. Database J. Biol. Databases Curation 2014 (2014)
Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014)
Rafal Rak, Jacob Carter, Andrew Rowley, Riza Theresa Batista-Navarro, Sophia Ananiadou
Interoperability and Customisation of Annotation Schemata in Argo. LREC (2014)
Rafal Rak, Riza Theresa Batista-Navarro, Andrew Rowley, Jacob Carter, Sophia Ananiadou
Text-mining-assisted biocuration workflows in Argo. Database J. Biol. Databases Curation 2014 (2014)
Rafal Rak, Andrew Rowley, Jacob Carter, Sophia Ananiadou
Development and Analysis of NLP Pipelines in Argo. ACL (Conference System Demonstrations) (2013)
Rafal Rak, Sophia Ananiadou
Making UIMA Truly Interoperable with SPARQL. LAW@ACL (2013)
Tomoko Ohta, Sampo Pyysalo, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Sophia Ananiadou, Jun'ichi Tsujii
Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013. BioNLP@ACL (Shared Task) (2013)
Makoto Miwa, Tomoko Ohta, Rafal Rak, Andrew Rowley, Douglas B. Kell, Sampo Pyysalo, Sophia Ananiadou
A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text. Bioinform. 29 (13) (2013)
Riza Theresa Batista-Navarro, Georgios Kontonatsios, Claudiu Mihaila, Paul Thompson, Rafal Rak, Raheel Nawaz, Ioannis Korkontzelos, Sophia Ananiadou
Facilitating the Analysis of Discourse Phenomena in an Interoperable NLP Platform. CICLing (1) (2013)
Rafal Rak, Andrew Rowley, Sophia Ananiadou
Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench. LREC (2012)
Rafal Rak, Andrew Rowley, William J. Black, Sophia Ananiadou
Argo: an integrative, interactive, text mining-based workbench supporting curation. Database J. Biol. Databases Curation 2012 (2012)
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. BMC Bioinform. 13 (S-11) (2012)
Rafal Rak, BalaKrishna Kolluru, Sophia Ananiadou
Building Trainable Taggers in a Web-based, UIMA-Supported NLP Workbench. ACL (System Demonstrations) (2012)
Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis Mateus Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinform. 12 (S-8) (2011)
Pawel Oswiecimka, Jaroslaw Kwapien, Iwona Celinska, Stanislaw Drozdz, Rafal Rak
Computational approach to multifractal music CoRR (2011)
Xinglong Wang, Rafal Rak, Angelo C. Restificar, Chikashi Nobata, C. J. Rupp, Riza Theresa Batista-Navarro, Raheel Nawaz, Sophia Ananiadou
Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature. BMC Bioinform. 12 (S-8) (2011)
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) (2011)
Rafal Rak, Lukasz A. Kurgan, Marek Reformat
Use of OWL 2 to Facilitate a Biomedical Knowledge Base Extracted from the GENIA Corpus. OWLED (2008)
Rafal Rak, Lukasz A. Kurgan, Marek Reformat
A tree-projection-based algorithm for multi-label recurrent-item associative-classification rule generation. Data Knowl. Eng. 64 (1) (2008)
Rafal Rak, Lukasz A. Kurgan, Marek Reformat
Multi-label associative classification of medical documents from MEDLINE. ICMLA (2005)
Rafal Rak, Wojciech Stach, Osmar R. Zaïane, Maria-Luiza Antonie
Considering Re-occurring Features in Associative Classifiers. PAKDD (2005)