Jun'ichi Tsujii

Publication Activity (10 Years)

Years Active: 1973-2020
Publications (10 Years): 12

Top Venues

BMC Bioinform.

Inf. Process. Manag.

COLING

EMNLP

Publications

Hicham El Boukkouri, Olivier Ferret, Thomas Lavergne, Hiroshi Noji, Pierre Zweigenbaum, Jun'ichi Tsujii
CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters. COLING (2020)
Yuki Arase, Jun'ichi Tsujii
Compositional Phrase Alignment and Beyond. EMNLP (1) (2020)
Yuki Arase, Jun'ichi Tsujii
Transfer Fine-Tuning: A BERT Case Study. EMNLP/IJCNLP (1) (2019)
Yifei Wang, Sophia Ananiadou, Jun'ichi Tsujii
Improving clinical named entity recognition in Chinese using the graphical and phonetic feature. BMC Medical Informatics Decis. Mak. (7) (2019)
Yuki Arase, Jun'ichi Tsujii
SPADE: Evaluation Dataset for Monolingual Phrase Alignment. LREC (2018)
Yifei Wang, Sophia Ananiadou, Jun'ichi Tsujii
Improve Chinese Clinical Named Entity Recognition Performance by Using the Graphical and Phonetic Feature. BIBM (2018)
Paul Thompson, Sophia Daikou, Kenju Ueno, Riza Batista-Navarro, Jun'ichi Tsujii, Sophia Ananiadou
Annotation and detection of drug effects in text for pharmacovigilance. J. Cheminformatics 10 (1) (2018)
Motoki Sato, Austin J. Brockmeier, Georgios Kontonatsios, Tingting Mu, John Yannis Goulermas, Jun'ichi Tsujii, Sophia Ananiadou
Distributed Document and Phrase Co-embeddings for Descriptive Clustering. EACL (1) (2017)
Weihua Hu, Jun'ichi Tsujii
A Latent Concept Topic Model for Robust Topic Inference Using Word Embeddings. ACL (2) (2016)
Yan Xu, Luoxin Chen, Junsheng Wei, Sophia Ananiadou, Yubo Fan, Yi Qian, Eric I-Chao Chang, Jun'ichi Tsujii
Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary. BMC Bioinform. 16 (2015)
Hiroya Takamura, Jun'ichi Tsujii
Estimating Numerical Attributes by Bringing Together Fragmentary Clues. HLT-NAACL (2015)
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Jun'ichi Tsujii, Sophia Ananiadou
Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013. BMC Bioinform. 16 (S10) (2015)
Georgios Kontonatsios, Ioannis Korkontzelos, Jun'ichi Tsujii, Sophia Ananiadou
Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora. EMNLP (2014)
Georgios Kontonatsios, Ioannis Korkontzelos, Jun'ichi Tsujii, Sophia Ananiadou
Using a Random Forest Classifier to Compile Bilingual Dictionaries of Technical Terms from Comparable Corpora. EACL (2014)
Pontus Stenetorp, Sampo Pyysalo, Sophia Ananiadou, Jun'ichi Tsujii
Generalising semantic category disambiguation with large lexical resources for fun and profit. J. Biomed. Semant. 5 (2014)
Hidekazu Oiwa, Jun'ichi Tsujii
Common Space Embedding of Primal-Dual Relation Semantic Spaces. COLING (2014)
Xu Sun, Naoaki Okazaki, Jun'ichi Tsujii, Houfeng Wang
Learning Abbreviations from Chinese and English Terms by Modeling Non-Local Information. ACM Trans. Asian Lang. Inf. Process. 12 (2) (2013)
Kenjiro Taura, Takuya Matsuzaki, Makoto Miwa, Yoshikazu Kamoshida, Daisaku Yokoyama, Nan Dun, Takeshi Shibata, Choi Sung Jun, Jun'ichi Tsujii
Design and implementation of GXP make - A workflow system based on make. Future Gener. Comput. Syst. 29 (2) (2013)
Han-Cheol Cho, Naoaki Okazaki, Makoto Miwa, Jun'ichi Tsujii
Named entity recognition with multiple segment representations. Inf. Process. Manag. 49 (4) (2013)
Tomoko Ohta, Sampo Pyysalo, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Sophia Ananiadou, Jun'ichi Tsujii
Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013. BioNLP@ACL (Shared Task) (2013)
Georgios Kontonatsios, Ioannis Korkontzelos, Sophia Ananiadou, Jun'ichi Tsujii
Using a Random Forest Classifier to recognise translations of biomedical terms across languages. BUCC@ACL (2013)
Xu Sun, Yao-zhong Zhang, Takuya Matsuzaki, Yoshimasa Tsuruoka, Jun'ichi Tsujii
Probabilistic Chinese word segmentation with non-local information and stochastic training. Inf. Process. Manag. 49 (3) (2013)
Jin-Dong Kim, Ngan L. T. Nguyen, Yue Wang, Jun'ichi Tsujii, Toshihisa Takagi, Akinori Yonezawa
The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011. BMC Bioinform. 13 (S-11) (2012)
Yao-zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii
Structure-guided supertagger learning. Nat. Lang. Eng. 18 (2) (2012)
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
Akamon: An Open Source Toolkit for Tree/Forest-Based Statistical Machine Translation. ACL (System Demonstrations) (2012)
Daniel Andrade, Takuya Matsuzaki, Jun'ichi Tsujii
Statistical Extraction and Comparison of Pivot Words for Bilingual Lexicon Extension. ACM Trans. Asian Lang. Inf. Process. 11 (2) (2012)
Pontus Stenetorp, Sampo Pyysalo, Tomoko Ohta, Sophia Ananiadou, Jun'ichi Tsujii
Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far. ExProM@ACL (2012)
Tingting Mu, John Yannis Goulermas, Jun'ichi Tsujii, Sophia Ananiadou
Proximity-Based Frameworks for Generating Embeddings from Multi-Output Data. IEEE Trans. Pattern Anal. Mach. Intell. 34 (11) (2012)
Jun Hatori, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
Incremental Joint Approach to Word Segmentation, POS Tagging, and Dependency Parsing in Chinese. ACL (1) (2012)
Pontus Stenetorp, Sampo Pyysalo, Goran Topic, Tomoko Ohta, Sophia Ananiadou, Jun'ichi Tsujii
brat: a Web-based Tool for NLP-Assisted Text Annotation. EACL (2012)
Atsushi Hanamoto, Takuya Matsuzaki, Jun'ichi Tsujii
Coordination Structure Analysis using Dual Decomposition. EACL (2012)
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. BMC Bioinform. 13 (S-11) (2012)
Xinkai Wang, Paul Thompson, Jun'ichi Tsujii, Sophia Ananiadou
Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries. LREC (2012)
Pontus Stenetorp, Goran Topic, Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, Jun'ichi Tsujii
BioNLP Shared Task 2011: Supporting Resources. BioNLP@ACL (Shared Task) (2011)
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
Effective Use of Function Words for Rule Generalization in Forest-Based Translation. ACL (2011)
Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun'ichi Tsujii
Extracting Bio-molecular Events from literature - the BioNLP'09 Shared Task. Comput. Intell. 27 (4) (2011)
Xinglong Wang, Iain McKendrick, Ian Barrett, Ian Dix, Tim French, Jun'ichi Tsujii, Sophia Ananiadou
Automatic extraction of angiogenesis bioprocess from text. Bioinform. 27 (19) (2011)
Ngan L. T. Nguyen, Jin-Dong Kim, Jun'ichi Tsujii
Overview of BioNLP 2011 Protein Coreference Shared Task. BioNLP@ACL (Shared Task) (2011)
Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, Jun'ichi Tsujii
Towards Exhaustive Event Extraction for Protein Modifications. BioNLP@ACL (2011)
Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Toshihisa Takagi, Jun'ichi Tsujii
Bio-molecular Event Extraction with Markov Logic. Comput. Intell. 27 (4) (2011)
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun'ichi Tsujii
Event extraction for DNA methylation. J. Biomed. Semant. 2 (S-5) (2011)
Pontus Stenetorp, Sampo Pyysalo, Jun'ichi Tsujii
SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation. BioNLP@ACL (2011)
Jun'ichi Tsujii
Computational Linguistics and Natural Language Processing. CICLing (1) (2011)
Katsuhito Sudoh, Kevin Duh, Hajime Tsukada, Masaaki Nagata, Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
NTT-UT Statistical Machine Translation in NTCIR-9 PatentMT. NTCIR (2011)
Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii
Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications. ICCABS (2011)
Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Robert Bossy, Ngan L. T. Nguyen, Jun'ichi Tsujii
Overview of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) (2011)
Yusuke Matsubara, Jun'ichi Tsujii
Large-vocabulary Lexical Choice with Rich Context Features. Int. J. Comput. Linguistics Appl. 2 (1-2) (2011)
Tadayoshi Hara, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
Exploring Difficulties in Parsing Imperatives and Questions. IJCNLP (2011)
Kun Yu, Yusuke Miyao, Takuya Matsuzaki, Xiangli Wang, Jun'ichi Tsujii
Analysis of the Difficulties in Chinese Deep Parsing. IWPT (2011)
Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii
Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) (2011)
Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) (2011)
Jun'ichi Tsujii
Natural Language Understanding, Semantic-based Information Retrieval and Knowledge Management. NTCIR (2011)
Jun Hatori, Akiko Murakami, Jun'ichi Tsujii
Multi-topical Discussion Summarization Using Structured Lexical Chains and Cue Words. CICLing (2) (2011)
Yoshimasa Tsuruoka, Makoto Miwa, Kaisei Hamamoto, Jun'ichi Tsujii, Sophia Ananiadou
Discovering and visualizing indirect associations between biomedical concepts. Bioinform. 27 (13) (2011)
Shun'ya Iwasawa, Hiroki Hanaoka, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
A Collaborative Annotation between Human Annotators and a Statistical Parser. Linguistic Annotation Workshop (2011)
Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii
From Pathways to Biomolecular Events: Opportunities and Challenges. BioNLP@ACL (2011)
Jun Hatori, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
Incremental Joint POS Tagging and Dependency Parsing in Chinese. IJCNLP (2011)
Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii
AGRA: analysis of gene ranking algorithms. Bioinform. 27 (8) (2011)
Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
An analysis of gene/protein associations at PubMed scale. J. Biomed. Semant. 2 (S-5) (2011)
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12 (2011)
Yoshinobu Kano, Makoto Miwa, K. Bretonnel Cohen, Lawrence Hunter, Sophia Ananiadou, Jun'ichi Tsujii
U-Compare: A modular NLP workflow construction and evaluation system. IBM J. Res. Dev. 55 (3) (2011)
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
SMT Systems in the University of Tokyo for NTCIR-9 PatentMT. NTCIR (2011)
Yu Usami, Han-Cheol Cho, Naoaki Okazaki, Jun'ichi Tsujii
Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition. BioNLP@ACL (2011)
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) (2011)
Daniel Andrade, Takuya Matsuzaki, Jun'ichi Tsujii
Effective Use of Dependency Structure for Bilingual Lexicon Creation. CICLing (2) (2011)
Yoshinobu Kano, Rubén Dorado, Luke McCrohon, Sophia Ananiadou, Jun'ichi Tsujii
U-Compare: An Integrated Language Resource Evaluation Platform Including a Comprehensive UIMA Resource Library. LREC (2010)
Tingting Mu, Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou
Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation. COLING (Posters) (2010)
Hiroki Hanaoka, Hideki Mima, Jun'ichi Tsujii
A Japanese Particle Corpus Built by Example-Based Annotation. LREC (2010)
Kun Yu, Yusuke Miyao, Xiangli Wang, Takuya Matsuzaki, Jun'ichi Tsujii
Semi-automatically Developing Chinese HPSG Grammar from the Penn Chinese Treebank for Deep Parsing. COLING (Posters) (2010)
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jin-Dong Kim, Jun'ichi Tsujii
Event Extraction for Post-Translational Modifications. BioNLP@ACL (2010)
Rune Sætre, Kazuhiro Yoshida, Makoto Miwa, Takuya Matsuzaki, Yoshinobu Kano, Jun'ichi Tsujii
Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction System. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (3) (2010)
Makoto Miwa, Rune Sætre, Jin-Dong Kim, Jun'ichi Tsujii
Event Extraction with Complex Event Classification Using Rich Features. J. Bioinform. Comput. Biol. 8 (1) (2010)
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski
Scaling up Biomedical Event Extraction to the Entire PubMed. BioNLP@ACL (2010)
Makoto Miwa, Sampo Pyysalo, Tadayoshi Hara, Jun'ichi Tsujii
A Comparative Study of Syntactic Parsers for Event Extraction. BioNLP@ACL (2010)
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun'ichi Tsujii
Event extraction for DNA methylation. Semantic Mining in Biomedicine (2010)
Yusuke Miyao, Alastair Butler, Kei Yoshimoto, Jun'ichi Tsujii
A Modular Architecture for the Wide-Coverage Translation of Natural Language Texts into Predicate Logic Formulas. PACLIC (2010)
Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
Improving the Inter-Corpora Compatibility for protein Annotations. J. Bioinform. Comput. Biol. 8 (5) (2010)
Yao-zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii
Forest-guided Supertagger Training. COLING (2010)
Brian Kemper, Takuya Matsuzaki, Yukiko Matsuoka, Yoshimasa Tsuruoka, Hiroaki Kitano, Sophia Ananiadou, Jun'ichi Tsujii
PathText: a text mining integrator for biological pathway visualizations. Bioinform. 26 (12) (2010)
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
Improve syntax-based translation using deep syntactic structures. Mach. Transl. 24 (2) (2010)
Daniel Andrade, Tetsuya Nasukawa, Jun'ichi Tsujii
Robust Measurement and Comparison of Context Similarity for Finding Translation Pairs. COLING (2010)
Naoaki Okazaki, Sophia Ananiadou, Jun'ichi Tsujii
Building a high-quality sense inventory for improved abbreviation disambiguation. Bioinform. 26 (9) (2010)
Tomoko Ohta, Sampo Pyysalo, Jin-Dong Kim, Jun'ichi Tsujii
A Re-Evaluation of Biomedical Named Entity-Term Relations. J. Bioinform. Comput. Biol. 8 (5) (2010)
Kenjiro Taura, Takuya Matsuzaki, Makoto Miwa, Yoshikazu Kamoshida, Daisaku Yokoyama, Nan Dun, Takeshi Shibata, Choi Sung Jun, Jun'ichi Tsujii
Design and Implementation of GXP Make - A Workflow System Based on Make. eScience (2010)
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski
Complex event extraction at PubMed scale. Bioinform. 26 (12) (2010)
Makoto Miwa, Rune Sætre, Yusuke Miyao, Jun'ichi Tsujii
Entity-Focused Sentence Simplification for Relation Extraction. COLING (2010)
Yao-zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii
A Simple Approach for HPSG Supertagging Using Dependency Information. HLT-NAACL (2010)
Makoto Miwa, Sampo Pyysalo, Tadayoshi Hara, Jun'ichi Tsujii
Evaluating Dependency Representations for Event Extraction. COLING (2010)
Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou
Disambiguating the species of biomedical named entities using natural language parsers. Bioinform. 26 (5) (2010)
Sampo Pyysalo, Tomoko Ohta, Han-Cheol Cho, Daniel E. Sullivan, Chunhong Mao, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
Towards Event Extraction from Full Texts on Infectious Diseases. BioNLP@ACL (2010)
Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
An Analysis of gene/protein associations at PubMed scale. Semantic Mining in Biomedicine (2010)
Yoshinobu Kano, Paul D. Dobson, Mio Nakanishi, Jun'ichi Tsujii, Sophia Ananiadou
Text mining meets workflow: linking U-Compare with Taverna. Bioinform. 26 (19) (2010)
Naoaki Okazaki, Jun'ichi Tsujii
Simple and Efficient Algorithm for Approximate Dictionary Matching. COLING (2010)
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
Fine-Grained Tree-to-String Translation Rule Extraction. ACL (2010)
Tomoko Ohta, Takuya Matsuzaki, Naoaki Okazaki, Makoto Miwa, Rune Sætre, Sampo Pyysalo, Jun'ichi Tsujii
Medie and Info-pubmed: 2010 update. BMC Bioinform. 11 (S-5) (2010)
Kun Yu, Xiangli Wang, Yusuke Miyao, Takuya Matsuzaki, Jun'ichi Tsujii
The Deep Re-Annotation in a Chinese Scientific Treebank. Linguistic Annotation Workshop (2010)
Kenta Oouchida, Jin-Dong Kim, Toshihisa Takagi, Jun'ichi Tsujii
GuideLink: A Corpus Annotation System that Integrates the Management of Annotation Guidelines. PACLIC (2009)
Makoto Miwa, Rune Sætre, Yusuke Miyao, Jun'ichi Tsujii
Protein-protein interaction extraction by leveraging multiple kernels and parsers. Int. J. Medical Informatics 78 (12) (2009)
Kun Yu, Jun'ichi Tsujii
Extracting Bilingual Dictionary from Comparable Corpora with Dependency Heterogeneity. HLT-NAACL (Short Papers) (2009)
Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou
Classifying Relations for Biomedical Named Entity Disambiguation. EMNLP (2009)

Jun'ichi Tsujii.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Jun'ichi Tsujii