Sofie Van Landeghem

Publication Activity (10 Years)

Years Active: 2009-2022
Publications (10 Years): 4

Top Topics

Quantitative Measures

Event Extraction

Textual Documents

Top Venues

BioNLP@ACL (Shared Task)

Publications

Lester James Miranda, Ákos Kádár, Adriane Boyd, Sofie Van Landeghem, Anders Søgaard, Matthew Honnibal
Multi hash embeddings in spaCy. CoRR (2022)
Suwisa Kaewphan, Sofie Van Landeghem, Tomoko Ohta, Yves Van de Peer, Filip Ginter, Sampo Pyysalo
Cell line name recognition in support of the identification of synthetic lethality in cancer from text. Bioinform. 32 (2) (2016)
Sofie Van Landeghem, Thomas Van Parys, Marieke Dubois, Dirk Inzé, Yves Van de Peer
Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks. BMC Bioinform. 17 (2016)
Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter
Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis. BMC Bioinform. 16 (S16) (2015)
Sofie Van Landeghem, Suwisa Kaewphan, Filip Ginter, Yves Van de Peer
Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures. BioNLP@ACL (2013)
Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter
EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction. BioNLP@ACL (Shared Task) (2013)
Sofie Van Landeghem, Kai Hakala, Samuel Rönnqvist, Tapio Salakoski, Yves Van de Peer, Filip Ginter
Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations. Adv. Bioinformatics 2012 (2012)
Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer
Semantically linking molecular entities in literature through entity relationships. BMC Bioinform. 13 (S-11) (2012)
Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. BioNLP@HLT-NAACL (2012)
Sofie Van Landeghem, Filip Ginter, Yves Van de Peer, Tapio Salakoski
EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions. BioNLP@ACL (2011)
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12 (2011)
Sofie Van Landeghem, Thomas Abeel, Bernard De Baets, Yves Van de Peer
Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction. BioNLP@ACL (Shared Task) (2011)
Sofie Van Landeghem, Bernard De Baets, Yves Van de Peer, Yvan Saeys
High-Precision Bio-molecular Event Extraction from Text Using Parallel Binary Classifiers. Comput. Intell. 27 (4) (2011)
Thomas Abeel, Sofie Van Landeghem, Roser Morante, Vincent Van Asch, Yves Van de Peer, Walter Daelemans, Yvan Saeys
Highlights of the BioTM 2010 workshop on advances in bio text mining. BMC Bioinform. 11 (S-5) (2010)
Yvan Saeys, Sofie Van Landeghem, Yves Van de Peer
Event based text mining for integrated network construction. MLSB (2010)
Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Yves Van de Peer
Integration of Static Relations to Enhance Event Extraction from Text. BioNLP@ACL (2010)
Sofie Van Landeghem, Thomas Abeel, Yvan Saeys, Yves Van de Peer
Discriminative and informative features for biomolecular text mining with ensemble feature selection. Bioinform. 26 (18) (2010)
Sofie Van Landeghem, Yvan Saeys, Bernard De Baets, Yves Van de Peer
Analyzing text in search of bio-molecular events: a high-precision machine learning framework. BioNLP@HLT-NAACL (Shared Task) (2009)