Makoto Miwa

ORCID

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 70

Top Venues

CoRR

BioNLP@ACL

J. Biomed. Informatics

Bioinform.

Publications

Savong Bou, Makoto Miwa, Yutaka Sasaki
Two evaluations on Ontology-style relation annotations. Comput. Speech Lang. 84 (2024)
Kohei Makino, Makoto Miwa, Yutaka Sasaki
End-to-End Trainable Soft Retriever for Low-resource Relation Extraction. CoRR (2024)
Mohammad Golam Sohrab, Masaki Asada, Matiss Rikters, Makoto Miwa
BERT-NAR-BERT: A Non-Autoregressive Pre-Trained Sequence-to-Sequence Model Leveraging BERT Checkpoints. IEEE Access 12 (2024)
Ken Yano, Makoto Miwa, Sophia Ananiadou
DISTANT: Distantly Supervised Entity Span Detection and Classification. BioNLP@ACL (2023)
Jake Vasilakes, Panagiotis Georgiadis, Nhung T. H. Nguyen, Makoto Miwa, Sophia Ananiadou
Contextualized medication event extraction with levitated markers. J. Biomed. Informatics 141 (2023)
Tomoki Tsujimura, Koshi Yamada, Ryuki Ida, Makoto Miwa, Yutaka Sasaki
Contextualized medication event extraction with striding NER and multi-turn QA. J. Biomed. Informatics 144 (2023)
Ryuki Ida, Makoto Miwa, Yutaka Sasaki
Biomedical Document Classification with Literature Graph Representations of Bibliographies and Entities. BioNLP@ACL (2023)
Nhung T. H. Nguyen, Makoto Miwa, Sophia Ananiadou
Span-based Named Entity Recognition by Generating and Compressing Information. CoRR (2023)
Matiss Rikters, Makoto Miwa
AIST AIRC Submissions to the WMT23 Shared Task. WMT (2023)
Masaki Asada, Makoto Miwa
BioNART: A Biomedical Non-AutoRegressive Transformer for Natural Language Generation. BioNLP@ACL (2023)
Masaki Asada, Makoto Miwa, Yutaka Sasaki
Integrating heterogeneous knowledge graphs into drug-drug interaction extraction from the literature. Bioinform. 39 (1) (2023)
Tomoki Tsujimura, Makoto Miwa, Yutaka Sasaki
Large-scale neural biomedical entity linking with layer overwriting. J. Biomed. Informatics 143 (2023)
Nhung Nguyen, Makoto Miwa, Sophia Ananiadou
Span-based Named Entity Recognition by Generating and Compressing Information. EACL (2023)
Takuma Matsubara, Makoto Miwa, Yutaka Sasaki
Distantly Supervised Document-Level Biomedical Relation Extraction with Neighborhood Knowledge Graphs. BioNLP@ACL (2023)
Koshi Yamada, Makoto Miwa, Yutaka Sasaki
Biomedical Relation Extraction with Entity Type Markers and Relation-specific Question Answering. BioNLP@ACL (2023)
Hai-Long Trieu, Makoto Miwa, Sophia Ananiadou
Named Entity Recognition for Cancer Immunology Research Using Distant Supervision. BioNLP@ACL (2022)
Kohei Makino, Fusataka Kuniyoshi, Jun Ozawa, Makoto Miwa
Extracting and Analyzing Inorganic Material Synthesis Procedures in the Literature. IEEE Access 10 (2022)
Jake Vasilakes, Chrysoula Zerva, Makoto Miwa, Sophia Ananiadou
Learning Disentangled Representations of Negation and Uncertainty. CoRR (2022)
Kurt J. P. Espinosa, Panagiotis Georgiadis, Fenia Christopoulou, Meizhi Ju, Makoto Miwa, Sophia Ananiadou
Comparing neural models for nested and overlapping biomedical event detection. BMC Bioinform. 23 (1) (2022)
Hai-Long Trieu, Makoto Miwa, Sophia Ananiadou
BioVAE: a pre-trained latent variable language model for biomedical text mining. Bioinform. 38 (3) (2022)
Naoki Iinuma, Makoto Miwa, Yutaka Sasaki
Improving Supervised Drug-Protein Relation Extraction with Distantly Supervised Models. BioNLP@ACL (2022)
Jake Vasilakes, Chrysoula Zerva, Makoto Miwa, Sophia Ananiadou
Learning Disentangled Representations of Negation and Uncertainty. ACL (1) (2022)
Hayato Futase, Tomoki Tsujimura, Tetsuya Kajimoto, Hajime Kawarazaki, Toshiyuki Suzuki, Makoto Miwa, Yutaka Sasaki
Physical Context and Timing Aware Sequence Generating GANs. CoRR (2021)
Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
Distantly Supervised Relation Extraction with Sentence Reconstruction and Knowledge Base Priors. CoRR (2021)
Masaki Asada, Nallappan Gunasekaran, Makoto Miwa, Yutaka Sasaki
Representing a Heterogeneous Pharmaceutical Knowledge-Graph with Textual Information. Frontiers Res. Metrics Anal. 6 (2021)
Kohei Makino, Makoto Miwa, Yutaka Sasaki
A Neural Edge-Editing Approach for Document-Level Relation Graph Extraction. CoRR (2021)
Masaki Asada, Makoto Miwa, Yutaka Sasaki
Using drug descriptions and molecular structures for drug-drug interaction extraction from literature. Bioinform. 37 (12) (2021)
Kohei Makino, Makoto Miwa, Yutaka Sasaki
A Neural Edge-Editing Approach for Document-Level Relation Graph Extraction. ACL/IJCNLP (Findings) (2021)
Fusataka Kuniyoshi, Jun Ozawa, Makoto Miwa
Analyzing Research Trends in Inorganic Materials Literature Using NLP. ECML/PKDD (5) (2021)
Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
Distantly Supervised Relation Extraction with Sentence Reconstruction and Knowledge Base Priors. NAACL-HLT (2021)
Fusataka Kuniyoshi, Jun Ozawa, Makoto Miwa
Analyzing Research Trends in Inorganic Materials Literature Using NLP. CoRR (2021)
Meizhi Ju, Nhung T. H. Nguyen, Makoto Miwa, Sophia Ananiadou
An ensemble of neural models for nested adverse drug events and medication extraction with subwords. J. Am. Medical Informatics Assoc. 27 (1) (2020)
Mohammad Golam Sohrab, Anh-Khoa Duong Nguyen, Makoto Miwa, Hiroya Takamura
mgsohrab at WNUT 2020 Shared Task-1: Neural Exhaustive Approach for Entity and Relation Recognition Over Wet Lab Protocols. W-NUT@EMNLP (2020)
Hai-Long Trieu, Thy Thy Tran, Anh-Khoa Duong Nguyen, Anh Nguyen, Makoto Miwa, Sophia Ananiadou
DeepEventMine: end-to-end neural nested event extraction from biomedical texts. Bioinform. 36 (19) (2020)
Savong Bou, Naoki Suzuki, Makoto Miwa, Yutaka Sasaki
Ontology-Style Relation Annotation: A Case Study. LREC (2020)
Fenia Christopoulou, Thy Thy Tran, Sunil Kumar Sahu, Makoto Miwa, Sophia Ananiadou
Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods. J. Am. Medical Informatics Assoc. 27 (1) (2020)
Mohammad Golam Sohrab, Khoa Duong, Makoto Miwa, Goran Topic, Ikeda Masami, Hiroya Takamura
BENNERD: A Neural Named Entity Linking System for COVID-19. EMNLP (Demos) (2020)
Fusataka Kuniyoshi, Kohei Makino, Jun Ozawa, Makoto Miwa
Annotating and Extracting Synthesis Process of All-Solid-State Batteries from Scientific Literature. LREC (2020)
Thy Thy Tran, Makoto Miwa, Sophia Ananiadou
Syntactically-informed word representations from graph neural network. Neurocomputing 413 (2020)
Fusataka Kuniyoshi, Kohei Makino, Jun Ozawa, Makoto Miwa
Annotating and Extracting Synthesis Process of All-Solid-State Batteries from Scientific Literature. CoRR (2020)
Sunil Kumar Sahu, Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network. CoRR (2019)
Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
Connecting the Dots: Document-level Neural Relation Extraction with Edge-oriented Graphs. EMNLP/IJCNLP (1) (2019)
Mohammad Golam Sohrab, Pham Minh Thang, Makoto Miwa, Hiroya Takamura
A Neural Pipeline Approach for the PharmaCoNER Shared Task using Contextual Exhaustive Models. BioNLP-OST@EMNLP-IJNCLP (2019)
Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
A Walk-based Model on Entity Graphs for Relation Extraction. CoRR (2019)
Kurt Junshean Espinosa, Makoto Miwa, Sophia Ananiadou
A Search-based Neural Model for Biomedical Nested and Overlapping Event Detection. CoRR (2019)
Sunil Kumar Sahu, Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network. ACL (1) (2019)
Kurt Junshean Espinosa, Makoto Miwa, Sophia Ananiadou
A Search-based Neural Model for Biomedical Nested and Overlapping Event Detection. EMNLP/IJCNLP (1) (2019)
Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
Connecting the Dots: Document-level Neural Relation Extraction with Edge-oriented Graphs. CoRR (2019)
Mohammad Golam Sohrab, Pham Minh Thang, Makoto Miwa
A Generic Neural Exhaustive Approach for Entity Recognition and Sensitive Span Detection. IberLEF@SEPLN (2019)
Hai-Long Trieu, Anh-Khoa Duong Nguyen, Nhung T. H. Nguyen, Makoto Miwa, Hiroya Takamura, Sophia Ananiadou
Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering. BioNLP-OST@EMNLP-IJNCLP (2019)
Meizhi Ju, Makoto Miwa, Sophia Ananiadou
A Neural Layered Model for Nested Named Entity Recognition. NAACL-HLT (2018)
Mohammad Golam Sohrab, Makoto Miwa
Deep Exhaustive Model for Nested Named Entity Recognition. EMNLP (2018)
Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou
A Walk-based Model on Entity Graphs for Relation Extraction. ACL (2) (2018)
Masaki Asada, Makoto Miwa, Yutaka Sasaki
Enhancing Drug-Drug Interaction Extraction from Texts by Molecular Structure Information. ACL (2) (2018)
Masaki Asada, Makoto Miwa, Yutaka Sasaki
Enhancing Drug-Drug Interaction Extraction from Texts by Molecular Structure Information. CoRR (2018)
Hai-Long Trieu, Nhung T. H. Nguyen, Makoto Miwa, Sophia Ananiadou
Investigating Domain-Specific Information for Neural Coreference Resolution on Biomedical Texts. BioNLP (2018)
Takuma Yoneda, Koki Mori, Makoto Miwa, Yutaka Sasaki
Bib2vec: Embedding-based Search System for Bibliographic Information. EACL (Software Demonstrations) (2017)
Takuma Yoneda, Koki Mori, Makoto Miwa, Yutaka Sasaki
Bib2vec: An Embedding-based Search System for Bibliographic Information. CoRR (2017)
Tomoki Tsujimura, Makoto Miwa, Yutaka Sasaki
TTI-COIN at SemEval-2017 Task 10: Investigating Embeddings for End-to-End Relation Extraction from Scientific Papers. SemEval@ACL (2017)
Masaki Asada, Makoto Miwa, Yutaka Sasaki
Extracting Drug-Drug Interactions with Attention CNNs. BioNLP (2017)
Yota Toyama, Makoto Miwa, Yutaka Sasaki
Utilizing Visual Forms of Japanese Characters for Neural Review Classification. IJCNLP(2) (2017)
Mohammad Golam Sohrab, Toru Nakata, Makoto Miwa, Yutaka Sasaki
EDGE2VEC: Edge Representations for Large-Scale Scalable Hierarchical Learning. Computación y Sistemas 21 (4) (2017)
Satoshi Yawata, Makoto Miwa, Yutaka Sasaki, Daisuke Hara
Analyzing Well-Formedness of Syllables in Japanese Sign Language. IJCNLP(2) (2017)
Makoto Miwa, Mohit Bansal
End-to-end Relation Extraction using LSTMs on Sequences and Tree Structures. CoRR (2016)
Natsuda Laokulrat, Makoto Miwa, Yoshimasa Tsuruoka
Stacking Approach to Temporal Relation Classification with Temporal Inference. Inf. Media Technol. 11 (2016)
Kazuma Hashimoto, Georgios Kontonatsios, Makoto Miwa, Sophia Ananiadou
Topic detection using paragraph vectors to support active learning in systematic reviews. J. Biomed. Informatics 62 (2016)
Makoto Miwa, Mohit Bansal
End-to-End Relation Extraction using LSTMs on Sequences and Tree Structures. ACL (1) (2016)
Mohammad Golam Sohrab, Makoto Miwa, Yutaka Sasaki
IN-DEDUCTIVE and DAG-Tree Approaches for Large-Scale Extreme Multi-label Hierarchical Text Classification. Polibits 54 (2016)
Josuke Yamane, Tomoya Takatani, Hitoshi Yamada, Makoto Miwa, Yutaka Sasaki
Distributional Hypernym Generation by Jointly Learning Clusters and Projections. COLING (2016)
Ioannis Korkontzelos, Beverley Thomas, Makoto Miwa, Sophia Ananiadou
Ensemble Classification of Grants using LDA-based Features. LREC (2016)
Makoto Miwa, Sophia Ananiadou
Adaptable, high recall, event extraction system with minimal configuration. BMC Bioinform. 16 (S10) (2015)
Mohammad Golam Sohrab, Makoto Miwa, Yutaka Sasaki
Centroid-Means-Embedding: An Approach to Infusing Word Embeddings into Features for Text Classification. PAKDD (1) (2015)
Kazuma Hashimoto, Pontus Stenetorp, Makoto Miwa, Yoshimasa Tsuruoka
Task-Oriented Learning of Word Embeddings for Semantic Relation Classification. CoRR (2015)
Nhung T. H. Nguyen, Makoto Miwa, Yoshimasa Tsuruoka, Satoshi Tojo
Identifying synonymy between relational phrases using word embeddings. J. Biomed. Informatics 56 (2015)
Masataka Ono, Makoto Miwa, Yutaka Sasaki
Word Embedding-based Antonym Detection using Thesauri and Distributional Information. HLT-NAACL (2015)
Kazuma Hashimoto, Pontus Stenetorp, Makoto Miwa, Yoshimasa Tsuruoka
Task-Oriented Learning of Word Embeddings for Semantic Relation Classification. CoNLL (2015)
Nhung T. H. Nguyen, Makoto Miwa, Yoshimasa Tsuruoka, Takashi Chikayama, Satoshi Tojo
Wide-coverage relation extraction from MEDLINE using deep syntax. BMC Bioinform. 16 (2015)
Kazuma Hashimoto, Pontus Stenetorp, Makoto Miwa, Yoshimasa Tsuruoka
Jointly Learning Word Representations and Composition Functions Using Predicate-Argument Structures. EMNLP (2014)
Makoto Miwa, Paul Thompson, Ioannis Korkontzelos, Sophia Ananiadou
Comparable Study of Event Extraction in Newswire and Biomedical Domains. COLING (2014)
Natsuda Laokulrat, Makoto Miwa, Yoshimasa Tsuruoka
Exploiting Timegraphs in Temporal Relation Classification. TextGraphs@EMNLP (2014)
Tingting Mu, Makoto Miwa, Junichi Tsujii, Sophia Ananiadou
Discovering robust Embeddings in (DIS)Similarity Space for High-Dimensional Linguistic Features. Comput. Intell. 30 (2) (2014)
Makoto Miwa, James Thomas, Alison O'Mara-Eves, Sophia Ananiadou
Reducing systematic review workload through certainty-based screening. J. Biomed. Informatics 51 (2014)
Makoto Miwa, Yutaka Sasaki
Modeling Joint Entity and Relation Extraction with Table Representation. EMNLP (2014)
Kenjiro Taura, Takuya Matsuzaki, Makoto Miwa, Yoshikazu Kamoshida, Daisaku Yokoyama, Nan Dun, Takeshi Shibata, Choi Sung Jun, Jun'ichi Tsujii
Design and implementation of GXP make - A workflow system based on make. Future Gener. Comput. Syst. 29 (2) (2013)
Han-Cheol Cho, Naoaki Okazaki, Makoto Miwa, Jun'ichi Tsujii
Named entity recognition with multiple segment representations. Inf. Process. Manag. 49 (4) (2013)
Kazuma Hashimoto, Makoto Miwa, Yoshimasa Tsuruoka, Takashi Chikayama
Simple Customization of Recursive Neural Networks for Semantic Relation Classification. EMNLP (2013)
Natsuda Laokulrat, Makoto Miwa, Yoshimasa Tsuruoka, Takashi Chikayama
UTTime: Temporal Relation Classification using Deep Syntactic Features. SemEval@NAACL-HLT (2013)
Makoto Miwa, Tomoko Ohta, Rafal Rak, Andrew Rowley, Douglas B. Kell, Sampo Pyysalo, Sophia Ananiadou
A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text. Bioinform. 29 (13) (2013)
Makoto Miwa, Sophia Ananiadou
NaCTeM EventMine for BioNLP 2013 CG and PC tasks. BioNLP@ACL (Shared Task) (2013)
Makoto Miwa, Sampo Pyysalo, Tomoko Ohta, Sophia Ananiadou
Wide coverage biomedical event extraction using multiple partially overlapping corpora. BMC Bioinform. 14 (2013)
Akira Ura, Makoto Miwa, Yoshimasa Tsuruoka, Takashi Chikayama
Comparison Training of Shogi Evaluation Functions with Self-Generated Training Positions and Moves. Computers and Games (2013)
Yoshikuni Sato, Makoto Miwa, Shogo Takeuchi, Daisuke Takahashi
Optimizing Objective Function Parameters for Strength in Computer Game-Playing. AAAI (2013)
Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, Han-Cheol Cho, Junichi Tsujii, Sophia Ananiadou
Event extraction across multiple levels of biological organization. Bioinform. 28 (18) (2012)
Makoto Miwa, Paul Thompson, John McNaught, Douglas B. Kell, Sophia Ananiadou
Extracting semantically enriched events from biomedical literature. BMC Bioinform. 13 (2012)
Ngan L. T. Nguyen, Jin-Dong Kim, Makoto Miwa, Takuya Matsuzaki, Junichi Tsujii
Improving protein coreference resolution by simple semantic classification. BMC Bioinform. 13 (2012)
Makoto Miwa, Paul Thompson, Sophia Ananiadou
Boosting automatic event extraction from the literature using domain adaptation and coreference resolution. Bioinform. 28 (13) (2012)
Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, Jun'ichi Tsujii
Towards Exhaustive Event Extraction for Protein Modifications. BioNLP@ACL (2011)
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun'ichi Tsujii
Event extraction for DNA methylation. J. Biomed. Semant. 2 (S-5) (2011)
Yoshimasa Tsuruoka, Makoto Miwa, Kaisei Hamamoto, Jun'ichi Tsujii, Sophia Ananiadou
Discovering and visualizing indirect associations between biomedical concepts. Bioinform. 27 (13) (2011)
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12 (2011)

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Publication Activity (10 Years)

Top Topics

Top Venues

Makoto Miwa