Jari Björne

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 12

Top Topics

Convolutional Neural Networks

Event Extraction

Svm Classification

Assisted Learning

Top Venues

SemEval@NAACL-HLT

Publications

Samuli Laato, Benedikt Morschheuser, Juho Hamari, Jari Björne
AI-Assisted Learning with ChatGPT and Large Language Models: Implications for Higher Education. ICALT (2023)
Kai Hakala, Suwisa Kaewphan, Jari Björne, Farrokh Mehryary, Hans Moen, Martti Tolvanen, Tapio Salakoski, Filip Ginter
Neural Network and Random Forest Models in Protein Function Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Samuli Laato, Mika Murtojärvi, Antti Airola, Jari Björne
Striving for platform independence in the e-learning landscape: a study on a flexible exercise creation system. ICALT (2022)
Hans Moen, Dari AlHuwail, Jari Björne, Lori Block, Sven Celin, Eunjoo Jeon, Karl Kreiner, James Mitchell, Gabriela Ozegovic, Charlene Esteban Ronquillo, Lydia Sequeira, Jude L. Tayaben, Maxim Topaz, Sai Pavan Kumar Veeranki, Laura-Maria Peltonen
Towards Automated Screening of Literature on Artificial Intelligence in Nursing. MedInfo (2021)
Olga Majewska, Charlotte Collins, Simon Baker, Jari Björne, Susan Windisch Brown, Anna Korhonen, Martha Palmer
BioVerbNet: a large semantic-syntactic classification of verbs in biomedicine. J. Biomed. Semant. 12 (1) (2021)
Samuli Laato, Henna Vilppu, Juho Heimonen, Antti Hakkala, Jari Björne, Ali Farooq, Tapio Salakoski, Antti Airola
Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module. FIE (2020)
Murhaf Fares, Stephan Oepen, Lilja Øvrelid, Jari Björne, Richard Johansson
The 2018 Shared Task on Extrinsic Parser Evaluation: On the Downstream Utility of English Universal Dependency Parsers. CoNLL Shared Task (2) (2018)
Farrokh Mehryary, Jari Björne, Tapio Salakoski, Filip Ginter
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction. Database J. Biol. Databases Curation 2018 (2018)
Jari Björne, Tapio Salakoski
Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing. BioNLP (2018)
Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter
End-to-End System for Bacteria Habitat Extraction. BioNLP (2017)
Farrokh Mehryary, Jari Björne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter
Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016. BioNLP (Shared Task) (2016)
Jari Björne, Tapio Salakoski
UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED). SemEval@NAACL-HLT (2016)
Jari Björne, Tapio Salakoski
TEES 2.2: Biomedical Event Extraction for Diverse Corpora. BMC Bioinform. 16 (S16) (2015)
Jari Björne, Tapio Salakoski
TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task. BioNLP@ACL (Shared Task) (2013)
Jari Björne, Suwisa Kaewphan, Tapio Salakoski
UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge. SemEval@NAACL-HLT (2013)
Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer
Semantically linking molecular entities in literature through entity relationships. BMC Bioinform. 13 (S-11) (2012)
Jari Björne, Filip Ginter, Tapio Salakoski
University of Turku in the BioNLP'11 Shared Task. BMC Bioinform. 13 (S-11) (2012)
Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. BioNLP@HLT-NAACL (2012)
Jari Björne, Tapio Salakoski
Generalizing Biomedical Event Extraction. BioNLP@ACL (Shared Task) (2011)
Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski
Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets. Comput. Intell. 27 (4) (2011)
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12 (2011)
Juho Heimonen, Jari Björne, Tapio Salakoski
Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain. BioNLP@ACL (2010)
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski
Scaling up Biomedical Event Extraction to the Entire PubMed. BioNLP@ACL (2010)
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski
Complex event extraction at PubMed scale. Bioinform. 26 (12) (2010)
Filip Ginter, Jari Björne, Sampo Pyysalo
Event extraction on PubMed scale. BMC Bioinform. 11 (S-5) (2010)
Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski
Extracting Complex Biological Events with Rich Graph-Based Feature Sets. BioNLP@HLT-NAACL (Shared Task) (2009)
Jari Björne, Filip Ginter, Juho Heimonen, Sampo Pyysalo, Tapio Salakoski
Learning to Extract Biological Event and Relation Graphs. NODALIDA (2009)
Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning. BMC Bioinform. 9 (S-11) (2008)
Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Björne, Filip Ginter, Tapio Salakoski
Comparative analysis of five protein-protein interaction corpora. BMC Bioinform. 9 (S-3) (2008)
Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski
A Graph Kernel for Protein-Protein Interaction Extraction. BioNLP (2008)
Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski
BioInfer: a corpus for information extraction in the biomedical domain. BMC Bioinform. 8 (2007)