Karin Verspoor

ORCID

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 174

Top Venues

CoRR

ALTA

BMC Bioinform.

Database J. Biol. Databases Curation

Publications

Aparna Elangovan, Jiayuan He, Yuan Li, Karin Verspoor
Principles from Clinical Research for NLP Model Generalization. NAACL-HLT (2024)
Thinh Hung Truong, Yulia Otmakhova, Karin Verspoor, Trevor Cohn, Timothy Baldwin
Revisiting subword tokenization: A case study on affixal negation in large language models. CoRR (2024)
Thinh Truong, Yulia Otmakhova, Karin Verspoor, Trevor Cohn, Timothy Baldwin
Revisiting subword tokenization: A case study on affixal negation in large language models. NAACL-HLT (2024)
Ahsan Shehzad, Feng Xia, Shagufta Abid, Ciyuan Peng, Shuo Yu, Dongyu Zhang, Karin Verspoor
Graph Transformers: A Survey. CoRR (2024)
Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Almeida, Richard A. A. Jonker, Sofia I R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. Database J. Biol. Databases Curation 2024 (2024)
Mingjie Li, Karin Verspoor
EMBRE: Entity-aware Masking for Biomedical Relation Extraction. CoRR (2024)
Jiayuan He, Yuan Li, Zenan Zhai, Biaoyan Fang, Camilo Thorne, Christian Druckenbrodt, Saber A. Akhondi, Karin Verspoor
Focused Contrastive Loss for Classification With Pre-Trained Language Models. IEEE Trans. Knowl. Data Eng. 36 (7) (2024)
Yuxia Wang, Shimin Tao, Ning Xie, Hao Yang, Timothy Baldwin, Karin Verspoor
Collective Human Opinions in Semantic Textual Similarity. Trans. Assoc. Comput. Linguistics 11 (2023)
Rahmad Mahendra, Damiano Spina, Karin Verspoor
ITTC at SemEval 2023-Task 7: Document Retrieval and Sentence Similarity for Evidence Retrieval in Clinical Trial Data. SemEval@ACL (2023)
Jinghui Liu, Daniel Capurro, Anthony Nguyen, Karin Verspoor
Uncovering Variations in Clinical Notes for NLP Modeling. MedInfo (2023)
Vlada Rozova, Anna Khanina, Jasmine C. Teng, Joanne S. K. Teh, Leon J. Worth, Monica A. Slavin, Karin A. Thursky, Karin Verspoor
Detecting evidence of invasive fungal infections in cytology and histopathology reports enriched with concept-level annotations. J. Biomed. Informatics 139 (2023)
Anna Khanina, Vlada Rozova, Sri Elkins, Karin Verspoor, Karin A. Thursky
Designing a Digital Health Solution: A Platform for Automated Surveillance of Fungal Infection. MedInfo (2023)
Yang Meng, Vlada Rozova, Karin Verspoor
CRF-based recognition of invasive fungal infection concepts in CHIFIR clinical reports. ALTA (2023)
Carol El-Hayek, Siamak Barzegar, Noel Faux, Kim Doyle, Priyanka Pillai, Simon J. Mutch, Alaina Vaisey, Roger Ward, Lena Sanci, Adam G. Dunn, Margaret Hellard, Jane S. Hocking, Karin Verspoor, Douglas IR. Boyle
An evaluation of existing text de-identification tools for use with patient progress notes from Australian general practice. Int. J. Medical Informatics 173 (2023)
Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
Attention-based multimodal fusion with contrast for robust clinical prediction in the face of missing modalities. J. Biomed. Informatics 145 (2023)
Yiyuan Pu, Daniel Beck, Karin Verspoor
Graph embedding-based link prediction for literature-based discovery in Alzheimer's Disease. J. Biomed. Informatics 145 (2023)
Simon Suster, Timothy Baldwin, Karin Verspoor
Promoting Fairness in Classification of Quality of Medical Evidence. BioNLP@ACL (2023)
Thinh Hung Truong, Timothy Baldwin, Karin Verspoor, Trevor Cohn
Language models are not naysayers: an analysis of language models on negation benchmarks. *SEM@ACL (2023)
Tabinda Sarwar, Sattar Seifollahi, Jeffrey Chan, Xiuzhen Zhang, Vural Aksakalli, Irene Lena Hudson, Karin Verspoor, Lawrence Cavedon
The Secondary Use of Electronic Health Records for Data Mining: Data Characteristics and Challenges. ACM Comput. Surv. 55 (2) (2023)
Melinda Wassell, James L. Murray, Chaithra Kumar, Karin Verspoor, Kerryn Butler-Henderson
Understanding Clinician EHR Data Quality for Reuse in Predictive Modelling. MedInfo (2023)
Antonio José Jimeno-Yepes, Karin Verspoor
Classifying literature mentions of biological pathogens as experimentally studied using natural language processing. J. Biomed. Semant. 14 (1) (2023)
Aparna Elangovan, Jiayuan He, Yuan Li, Karin Verspoor
Effects of Human Adversarial and Affable Samples on BERT Generalizability. CoRR (2023)
Aparna Elangovan, Jiayuan He, Yuan Li, Karin Verspoor
Principles from Clinical Research for NLP Model Generalization. CoRR (2023)
Yuxia Wang, Shimin Tao, Ning Xie, Hao Yang, Timothy Baldwin, Karin Verspoor
Collective Human Opinions in Semantic Textual Similarity. CoRR (2023)
Thinh Hung Truong, Timothy Baldwin, Karin Verspoor, Trevor Cohn
Language models are not naysayers: An analysis of language models on negation benchmarks. CoRR (2023)
Huiling Tu, Shuo Yu, Vidya Saikrishna, Feng Xia, Karin Verspoor
Deep Outdated Fact Detection in Knowledge Graphs. ICDM (Workshops) (2023)
Aparna Elangovan, Estrid He, Yuan Li, Karin Verspoor
Effects of Human Adversarial and Affable Samples on BERT Generalizability. EMNLP (Findings) (2023)
Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
Improving Text-based Early Prediction by Distillation from Privileged Time-Series Text. CoRR (2023)
Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Antonio Jimeno-Yepes, Jey Han Lau
M3: Multi-level dataset for Multi-document summarisation of Medical studies. EMNLP (Findings) (2022)
Mingjie Li, Wenjia Cai, Karin Verspoor, Shirui Pan, Xiaodan Liang, Xiaojun Chang
Cross-modal Clinical Graph Transformer for Ophthalmic Report Generation. CVPR (2022)
Yulia Otmakhova, Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor, Jey Han Lau
LED down the rabbit hole: exploring the potential of global attention for biomedical multi-document summarisation. CoRR (2022)
Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. BMC Bioinform. 23 (1) (2022)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Kojiro Machi, Masaharu Yoshioka, Youngrok Jang, Hosung Song, Junho Lee, Gyeonghun Kim, Yireun Kim, Stanley Jungkyu Choi, Honglak Lee, Kyunghoon Bae, Darshini Mahendran, Christina Tang, Bridget T. McInnes, Timothy Baldwin, Karin Verspoor
Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF (Working Notes) (2022)
Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor
Improving negation detection with negation-focused pre-training. CoRR (2022)
Asher Lederman, Reeva Lederman, Karin Verspoor
Tasks as needs: reframing the paradigm of clinical natural language processing research for real-world decision support. J. Am. Medical Informatics Assoc. 29 (10) (2022)
Benjamin Goudey, Nicholas Geard, Karin Verspoor, Justin Zobel
Propagation, detection and correction of errors using the sequence database network. Briefings Bioinform. 23 (6) (2022)
Yuxia Wang, Timothy Baldwin, Karin Verspoor
Noisy Label Regularisation for Textual Regression. COLING (2022)
Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. CoRR (2022)
Yulia Otmakhova, Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor, Jey Han Lau
LED down the rabbit hole: exploring the potential of global attention for biomedical multi-document summarisation. SDP@COLING (2022)
Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Jey Han Lau
The patient is more dead than alive: exploring the current state of the multi-document summarisation of the biomedical literature. ACL (1) (2022)
Thinh Hung Truong, Yulia Otmakhova, Timothy Baldwin, Trevor Cohn, Jey Han Lau, Karin Verspoor
Not another Negation Benchmark: The NaN-NLI Test Suite for Sub-clausal Negation. AACL/IJCNLP (1) (2022)
Antonio Jimeno-Yepes, Karin Verspoor
READ-BioMed@SocialDisNER: Adaptation of an Annotation System to Spanish Tweets. SMM4H@COLING (2022)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor
Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF (2022)
Mingjie Li, Wenjia Cai, Karin Verspoor, Shirui Pan, Xiaodan Liang, Xiaojun Chang
Cross-modal Clinical Graph Transformer for Ophthalmic Report Generation. CoRR (2022)
Vlada Rozova, Katrina Witt, Jo Robinson, Yan Li, Karin Verspoor
Detection of self-harm and suicidal ideation in emergency department triage notes. J. Am. Medical Informatics Assoc. 29 (3) (2022)
Thinh Hung Truong, Yulia Otmakhova, Rahmad Mahendra, Timothy Baldwin, Jey Han Lau, Trevor Cohn, Lawrence Cavedon, Damiano Spina, Karin Verspoor
ITTC @ TREC 2021 Clinical Trials Track. CoRR (2022)
Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
"Note Bloat" impacts deep learning-based NLP models for clinical prediction tasks. J. Biomed. Informatics 133 (2022)
Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor
Improving negation detection with negation-focused pre-training. NAACL-HLT (2022)
Gourab Ghosh Roy, Nicholas Geard, Karin Verspoor, Shan He
MPVNN: Mutated Pathway Visible Neural Network architecture for interpretable prediction of cancer-specific survival risk. Bioinform. 38 (22) (2022)
Yuxia Wang, Daniel Beck, Karin Verspoor, Timothy Baldwin
Uncertainty Estimation and Reduction of Pre-trained Models for Text Regression. Trans. Assoc. Comput. Linguistics 10 (2022)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zenan Zhai, Zubair Afzal, Trevor Cohn, Timothy Baldwin, Karin Verspoor
The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. ECIR (2) (2022)
Biaoyan Fang, Timothy Baldwin, Karin Verspoor
What does it take to bake a cake? The RecipeRef corpus and anaphora resolution in procedural text. ACL (Findings) (2022)
Thinh Hung Truong, Yulia Otmakhova, Timothy Baldwin, Trevor Cohn, Jey Han Lau, Karin Verspoor
Not another Negation Benchmark: The NaN-NLI Test Suite for Sub-clausal Negation. CoRR (2022)
Antonio Jimeno-Yepes, Karin Verspoor
The READ-BioMed Team in LivingNER Task 1 (2022): Adaptation of an English Annotation System to Spanish. IberLEF@SEPLN (2022)
Antonio Jimeno-Yepes, Karin Verspoor
Distinguishing between focus and background entities in biomedical corpora using discourse structure and transformers. LOUHI@EMNLP (2022)
Karin Verspoor
Why Bother Enabling Biomedical Literature Analysis with Semantics? WWW (Companion Volume) (2022)
Simon Suster, Karin Verspoor, Timothy Baldwin, Jey Han Lau, Antonio Jimeno-Yepes, David Martínez, Yulia Otmakhova
Impact of detecting clinical trial elements in exploration of COVID-19 literature. CoRR (2021)
Ziad Al Bkhetan, Gursharan Chana, Kotagiri Ramamohanarao, Karin Verspoor, Benjamin Goudey
Evaluation of consensus strategies for haplotype phasing. Briefings Bioinform. 22 (4) (2021)
Aparna Elangovan, Jiayuan He, Karin Verspoor
Memorization vs. Generalization: Quantifying Data Leakage in NLP Performance Evaluation. CoRR (2021)
Jiyu Chen, Nicholas Geard, Justin Zobel, Karin Verspoor
Automatic consistency assurance for literature-based gene ontology annotation. BMC Bioinform. 22 (1) (2021)
Ke Cao, Karin Verspoor, Elsie Chan, Mark Daniell, Srujana Sahebjada, Paul N. Baird
Machine learning with a reduced dimensionality representation of comprehensive Pentacam tomography parameters to identify subclinical keratoconus. Comput. Biol. Medicine 138 (2021)
Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents. Frontiers Res. Metrics Anal. 6 (2021)
Gourab Ghosh Roy, Nicholas Geard, Karin Verspoor, Shan He
PoLoBag: Polynomial Lasso Bagging for signed gene regulatory network inference from expression data. Bioinform. 36 (21) (2021)
Mingjie Li, Wenjia Cai, Rui Liu, Yuetian Weng, Xiaoyun Zhao, Cong Wang, Xin Chen, Zhong Liu, Caineng Pan, Mengke Li, Yingfeng Zheng, Yizhi Liu, Flora D. Salim, Karin Verspoor, Xiaodan Liang, Xiaojun Chang
FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark. NeurIPS Datasets and Benchmarks (2021)
Mary Regina Boland, Karin Verspoor, Maricel G. Kann, Su Golder, Lisa Levine, Karen O'Conner, Natalia Villanueva-Rosales, Graciela Gonzalez-Hernandez
Advanced Methods for Big Data Analytics in Women's Health. PSB (2021)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor
Extended Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF (Working Notes) (2021)
Biaoyan Fang, Christian Druckenbrodt, Saber A. Akhondi, Jiayuan He, Timothy Baldwin, Karin Verspoor
ChEMU-Ref: A Corpus for Modeling Anaphora Resolution in the Chemical Domain. EACL (2021)
Aparna Elangovan, Jiayuan He, Karin Verspoor
Memorization vs. Generalization : Quantifying Data Leakage in NLP Performance Evaluation. EACL (2021)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor
Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF (2021)
Jiayuan He, Biaoyan Fang, Hiyori Yoshikawa, Yuan Li, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. ECIR (2) (2021)
Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martínez
Brief Description of COVID-SEE: The Scientific Evidence Explorer for COVID-19 Related Research. ECIR (2) (2021)
Hung-Thinh Truong, Yulia Otmakhova, Timothy Baldwin, Jey Han Lau, Trevor Cohn, Karin Verspoor, Rahmad Mahendra, Lawrence Cavedon, Damiano Spina
ITTC @ TREC 2021 Clinical Trials Track. TREC (2021)
Zenan Zhai, Christian Druckenbrodt, Camilo Thorne, Saber A. Akhondi, Dat Quoc Nguyen, Trevor Cohn, Karin Verspoor
ChemTables: a dataset for semantic classification on tables in chemical patents. J. Cheminformatics 13 (1) (2021)
Jinghui Liu, Daniel Capurro, Anthony N. Nguyen, Karin Verspoor
Early prediction of diagnostic-related groups and estimation of hospital cost by processing clinical notes. npj Digit. Medicine 4 (2021)
Simon Suster, Karin Verspoor, Timothy Baldwin, Jey Han Lau, Antonio Jimeno-Yepes, David Martinez Iraola, Yulia Otmakhova
Impact of detecting clinical trial elements in exploration of COVID-19 literature. ICHI (2021)
Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman
Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. AMIA (2021)
Liliya Akhtyamova, Paloma Martínez, Karin Verspoor, John Cardiff
Testing Contextualized Word Embeddings to Improve NER in Spanish Clinical Case Narratives. IEEE Access 8 (2020)
Brian Hur, Timothy Baldwin, Karin Verspoor, Laura Hardefeldt, James Gilkerson
Domain Adaptation and Instance Selection for Disease Syndrome Classification over Veterinary Clinical Notes. BioNLP (2020)
Aparna Elangovan, Melissa J. Davis, Karin Verspoor
Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts. CoRR (2020)
Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) (2020)
Qingyu Chen, Ramona Britto, Ivan Erill, Constance J. Jeffery, Arthur Liberzon, Michele Magrane, Jun-ichi Onami, Marc Robinson-Rechavi, Jana Sponarova, Justin Zobel, Karin Verspoor
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. Genom. Proteom. Bioinform. 18 (2) (2020)
Yuxia Wang, Karin Verspoor, Timothy Baldwin
Learning from Unlabelled Data for Clinical Semantic Textual Similarity. ClinicalNLP@EMNLP (2020)
Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
Overview of ChEMU 2020: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. CLEF (2020)
Dat Quoc Nguyen, Zenan Zhai, Hiyori Yoshikawa, Biaoyan Fang, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Saber A. Akhondi, Trevor Cohn, Timothy Baldwin, Karin Verspoor
ChEMU: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. ECIR (2) (2020)
Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martínez
COVID-SEE: Scientific Evidence Explorer for COVID-19 Related Research. CoRR (2020)
Afshin Rahimi, Timothy Baldwin, Karin Verspoor
WikiUMLS: Aligning UMLS to Wikipedia via Cross-lingual Neural Ranking. CoRR (2020)
Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Simon Suster
Improved Topic Representations of Medical Documents to Assist COVID-19 Literature Exploration. NLP4COVID@EMNLP (2020)
Yuxia Wang, Fei Liu, Karin Verspoor, Timothy Baldwin
Evaluating the Utility of Model Configurations and Data Augmentation on Clinical Semantic Textual Similarity. BioNLP (2020)
Afshin Rahimi, Timothy Baldwin, Karin Verspoor
WikiUMLS: Aligning UMLS to Wikipedia via Cross-lingual Neural Ranking. COLING (2020)
Jiyu Chen, Karin Verspoor, Zenan Zhai
A Bag-of-concepts Model Improves Relation Extraction in a Narrow Knowledge Domain with Limited Data. NAACL-HLT (Student Research Workshop) (2019)
Qingyu Chen, Xiuzhen Zhang, Yu Wan, Justin Zobel, Karin Verspoor
Search Effectiveness in Nonredundant Sequence Databases: Assessments and Solutions. J. Comput. Biol. 26 (6) (2019)
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8 (2019)
Jiyu Chen, Karin Verspoor, Zenan Zhai
A bag-of-concepts model improves relation extraction in a narrow knowledge domain with limited data. CoRR (2019)
Dat Quoc Nguyen, Karin Verspoor
End-to-End Neural Relation Extraction Using Deep Biaffine Attention. ECIR (1) (2019)
Preslav Nakov, Doris Hoogeveen, Lluís Màrquez, Alessandro Moschitti, Hamdy Mubarak, Timothy Baldwin, Karin Verspoor
SemEval-2017 Task 3: Community Question Answering. CoRR (2019)
Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C. Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C. Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altinel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database J. Biol. Databases Curation 2019 (2019)
Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor
Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. BioNLP@ACL (2019)
Ziad Al Bkhetan, Justin Zobel, Adam Kowalczyk, Karin Verspoor, Benjamin Goudey
Exploring effective approaches for haplotype block phasing. BMC Bioinform. 20 (1) (2019)
Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor
Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. CoRR (2019)
Hamed Hassanzadeh, Anthony N. Nguyen, Karin Verspoor
Quantifying semantic similarity of clinical evidence in the biomedical literature to facilitate related evidence synthesis. J. Biomed. Informatics 100 (2019)

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Publication Activity (10 Years)

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Karin Verspoor