Camilo Thorne

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 31

Top Topics

Conditional Random Fields

Information Extraction

Chemical Reactions

Anaphora Resolution

Top Venues

CLEF (Working Notes)

Publications

Jiayuan He, Yuan Li, Zenan Zhai, Biaoyan Fang, Camilo Thorne, Christian Druckenbrodt, Saber A. Akhondi, Karin Verspoor
Focused Contrastive Loss for Classification With Pre-Trained Language Models. IEEE Trans. Knowl. Data Eng. 36 (7) (2024)
Thomas Jurriaans, Kinga Szarkowska, Eric Nalisnick, Markus Schwörer, Camilo Thorne, Saber A. Akhondi
One Strike, You're Out: Detecting Markush Structures in Low Signal-to-Noise Ratio Images. CoRR (2023)
Chieling Yueh, Evangelos Kanoulas, Bruno Martins, Camilo Thorne, Saber A. Akhondi
Stress Testing BERT Anaphora Resolution Models for Reaction Extraction in Chemical Patents. CoRR (2023)
Maziar Moradi Fard, Paula Sorrolla Bayod, Kiomars Motarjem, Mohammad Alian Nejadi, Saber A. Akhondi, Camilo Thorne
Learning Section Weights for Multi-Label Document Classification. CoRR (2023)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Kojiro Machi, Masaharu Yoshioka, Youngrok Jang, Hosung Song, Junho Lee, Gyeonghun Kim, Yireun Kim, Stanley Jungkyu Choi, Honglak Lee, Kyunghoon Bae, Darshini Mahendran, Christina Tang, Bridget T. McInnes, Timothy Baldwin, Karin Verspoor
Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF (Working Notes) (2022)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor
Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF (2022)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zenan Zhai, Zubair Afzal, Trevor Cohn, Timothy Baldwin, Karin Verspoor
The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. ECIR (2) (2022)
Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents. Frontiers Res. Metrics Anal. 6 (2021)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor
Extended Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF (Working Notes) (2021)
Vladimir Araujo, Andrés Carvallo, Carlos Aspillaga, Camilo Thorne, Denis Parra
Stress Test Evaluation of Biomedical Word Embeddings. BioNLP@NAACL-HLT (2021)
Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor
Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF (2021)
Jiayuan He, Biaoyan Fang, Hiyori Yoshikawa, Yuan Li, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. ECIR (2) (2021)
Zenan Zhai, Christian Druckenbrodt, Camilo Thorne, Saber A. Akhondi, Dat Quoc Nguyen, Trevor Cohn, Karin Verspoor
ChemTables: a dataset for semantic classification on tables in chemical patents. J. Cheminformatics 13 (1) (2021)
Vladimir Araujo, Andrés Carvallo, Carlos Aspillaga, Camilo Thorne, Denis Parra
Stress Test Evaluation of Biomedical Word Embeddings. CoRR (2021)
Dhruba Pujary, Camilo Thorne, Wilker Aziz
Disease Normalization with Graph Embeddings. CoRR (2020)
Camilo Thorne, Saber A. Akhondi
Word Embeddings for Chemical Patent Natural Language Processing. CoRR (2020)
Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) (2020)
Dhruba Pujary, Camilo Thorne, Wilker Aziz
Disease Normalization with Graph Embeddings. IntelliSys (2) (2020)
Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
Overview of ChEMU 2020: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. CLEF (2020)
Dat Quoc Nguyen, Zenan Zhai, Hiyori Yoshikawa, Biaoyan Fang, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Saber A. Akhondi, Trevor Cohn, Timothy Baldwin, Karin Verspoor
ChEMU: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. ECIR (2) (2020)
Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor
Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. BioNLP@ACL (2019)
Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor
Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. CoRR (2019)
Hiyori Yoshikawa, Dat Quoc Nguyen, Zenan Zhai, Christian Druckenbrodt, Camilo Thorne, Saber A. Akhondi, Timothy Baldwin, Karin Verspoor
Detecting Chemical Reactions in Patents. ALTA (2019)
Camilo Thorne, Roman Klinger
On the Semantic Similarity of Disease Mentions in MEDLINE and Twitter. NLDB (2018)
Erman Acar, Manuel Fink, Christian Meilicke, Camilo Thorne, Heiner Stuckenschmidt
Multi-Attribute Decision Making with Weighted Description Logics. FLAP 4 (7) (2017)
Camilo Thorne
Chatbots for troubleshooting: A survey. Lang. Linguistics Compass 11 (10) (2017)
Camilo Thorne, Roman Klinger
Towards Confidence Estimation for Typed Protein-Protein Relation Extraction. BiomedicalNLP@RANLP (2017)
Jenny Copara, José Ochoa, Camilo Thorne, Goran Glavas
Spanish NER with Word Representations and Conditional Random Fields. NEWS@ACM (2016)
Jenny Copara, José Ochoa, Camilo Thorne, Goran Glavas
Exploring Unsupervised Features in Conditional Random Fields for Spanish Named Entity Recognition. BRACIS (2016)
Jenny Copara, José Ochoa, Camilo Thorne, Goran Glavas
Conditional Random Fields for Spanish Named Entity Recognition Using Unsupervised Features. IBERAMIA (2016)
Camilo Thorne, Stefano Faralli, Heiner Stuckenschmidt
Cross-Evaluation of Entity Linking and Disambiguation Systems for Clinical Text Annotation. SEMANTiCS (2016)
Erman Acar, Camilo Thorne, Heiner Stuckenschmidt
Towards Decision Making via Expressive Probabilistic Ontologies. ADT (2015)
Jakub Szymanik, Camilo Thorne
Semantic Complexity of Quantifiers and Their Distribution in Corpora. IWCS (2015)
Camilo Thorne
Chases and Bag-Set Certain Answers. CoRR (2014)
Camilo Thorne
The Expressive Power of DL-Lite. CoRR (2014)
Camilo Thorne, Elena Cardillo, Claudio Eccher, Marco Montali, Diego Calvanese
Process Fragment Recognition in Clinical Documents. AI*IA (2013)
Camilo Thorne, Marco Montali, Diego Calvanese, Elena Cardillo, Claudio Eccher
Automated Activity Recognition in Clinical Documents. IJCNLP (2013)
Camilo Thorne, Diego Calvanese
Tractability and Intractability of Controlled Languages for Data Access. Stud Logica 100 (4) (2012)
Camilo Thorne
Querying the Fragments of English. WoLLIC (2011)
Camilo Thorne, Diego Calvanese
Controlled English Ontology-Based Data Access. CNL (2009)
Camilo Thorne, Diego Calvanese
Controlled Aggregate Tree Shaped Questions over Ontologies. FQAS (2009)
Camilo Thorne, Diego Calvanese
Exploring Controlled English Ontology-Based Data Access. CNL (Pre-Proceedings) (2009)
Camilo Thorne, Diego Calvanese
The Data Complexity of the Syllogistic Fragments of English. Amsterdam Colloquium on Logic, Language and Meaning (2009)
Diego Calvanese, Evgeny Kharlamov, Werner Nutt, Camilo Thorne
Aggregate queries over ontologies. ONISW (2008)
Raffaella Bernardi, Diego Calvanese, Camilo Thorne
Expressing DL-Lite Ontologies with Controlled English. Description Logics (2007)
Camilo Thorne
Categorial Module Grammars of Bounded Size have Finite Bounded Density. LATA (2007)
Raffaella Bernardi, Francesca Bonin, Diego Calvanese, Domenico Carbotta, Camilo Thorne
English Querying over Ontologies: E-QuOnto. AI*IA (2007)