Mark D. Wilkinson

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 20

Top Topics

Biomedical Ontologies

Infectious Disease

Knowledge Extraction

Top Venues

J. Biomed. Semant.

Publications

Adam Wright, Mark D. Wilkinson, Christopher J. Mungall, Scott Cain, Stephen Richards, Paul W. Sternberg, Ellen Provin, Jonathan L. Jacobs, Scott Geib, Daniela Raciti, Karen Yook, Lincoln Stein, David C. Molik
FAIR Header Reference genome: a TRUSTworthy standard. Briefings Bioinform. 25 (3) (2024)
Alberto Cámara Ballesteros, Nirupama Benis, César Henrique Bernabé, Inés de Oliveira Coelho, Clémence M. A. Le Cornec, Aylin Demir, Bruna dos Santos Vieira, Jose Antonio Ramírez, K. Joeri van der Velde, Shuxin Zhang, Ronald Cornet, Annika Jacobsen, Marco Roos, Franz Schaefer, Morris A. Swertz, Mark D. Wilkinson
Surveyed common data access policies preferences amongst European Reference Networks. SWAT4HCLS (2023)
Luiz Olavo Bonino da Silva Santos, Kees Burger, Rajaram Kaliyaperumal, Mark D. Wilkinson
FAIR Data Point: A FAIR-Oriented Approach for Metadata Publication. Data Intell. 5 (1) (2023)
Oussama Mohammed Benhamed, Kees Burger, Rajaram Kaliyaperumal, Luiz Olavo Bonino da Silva Santos, Marek Suchánek, Jan Slifka, Mark D. Wilkinson
The FAIR Data Point: Interfaces and Tooling. Data Intell. 5 (1) (2023)
Ian R. Braun, Pablo Alarcón Moreno, Emily Hartley, Daniel Olson, Nirupama Benis, Ronald Cornet, Mark D. Wilkinson, Ramona L. Walls
Leveraging Biolink for Interoperability between Semantic Models. AMIA (2022)
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. J. Biomed. Semant. 13 (1) (2022)
Daniel S. Katz, Morane Gruenpeter, Tom Honeyman, Lorraine J. Hwang, Mark D. Wilkinson, Vanessa Sochat, Hartwig Anzt, Carole A. Goble
A Fresh Look at FAIR for Research Software. CoRR (2021)
Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos
Reuse of Design Pattern Measurements for Health Data. JOWO (2021)
Beatriz García Jiménez, Jorge Muñoz, Sara Cabello, Joaquín Medina, Mark D. Wilkinson
Predicting microbiomes through a deep latent space. Bioinform. 37 (10) (2021)
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9 (2020)
Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2 (1-2) (2020)
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8 (2019)
Peter Wittenburg, Hana Pergl Sustkova, Annalisa Montesanti, Margreet Bloemers, S. H. de Waard, Mark A. Musen, John Graybeal, Kristina M. Hettne, Annika Jacobsen, Robert Pergl, Rob W. W. Hooft, Christine Staiger, Celia W. G. van Gelder, Sebastiaan L. Knijnenburg, A. C. van Arkel, Bert Meerman, Mark D. Wilkinson, Susanna-Assunta Sansone, Philippe Rocca-Serra, Peter McQuilton, Alejandra N. González-Beltrán, G. J. C. Aben, Patrícia Henning, Maria Simone de Menezes Alencar, C. Ribeiro, C. R. L. Silva, Luís Fernando Sayão, Luana Sales, Viviane Veiga, Jefferson Lima, Simone Dib, Paula Xavier dos Santos, R. Murtinho, Jakob Tendel, B. F. Schaap, P. M. Brouwer, A. K. Gavai, Yamine Bouzembrak, Hans J. P. Marvin, Albert Mons, Tobias Kuhn, A. A. Gambardella, Ricardo de Miranda Azevedo, Vesa Muhonen, Mira van der Naald, N. W. Smit, M. J. Buys, Taco F. de Bruin, Fieke Schoots, H. J. E. Goodson, Henry S. Rzepa, Keith G. Jeffery, Hugh P. Shanahan, M. Axton, Veniamin Tkachenko, Anne Deslattes Mays, Natalie Meyers, Michael Conlon, Laurel L. Haak, Erik A. Schultes
The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data. CoRR (2019)
Beatriz García Jiménez, Tomás de la Rosa, Mark D. Wilkinson
MDPbiome: microbiome engineering through prescriptive perturbations. Bioinform. 34 (17) (2018)
Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. 5 (2017)
Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Comput. Sci. 3 (2017)
Barend Mons, Cameron Neylon, Jan Velterop, Michel Dumontier, Luiz Olavo Bonino da Silva Santos, Mark D. Wilkinson
Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud. Inf. Serv. Use 37 (1) (2017)
Claudio Carta, Marco Roos, Annika Jacobsen, Rajaram Kaliyaperumal, Mark Thompson, Mark D. Wilkinson, Ronald Cornet, Andra Waagmeester, David van Enckevort, Mascha Jansen, Luana Licata, Allegra Via, Domenica Taruscio
The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop. SWAT4LS (2017)
Marco Roos, Mark D. Wilkinson, Rajaram Kaliyaperumal, Mark Thompson, Claudio Carta, Ronald Cornet, Luiz Olavo Bonino da Silva Santos
Registries of Domain-Relevant Semantic Reference Models Help Bootstrap Interoperability in Domains with Fragmented Data Resources. SWAT4LS (2016)
Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. 4 (2016)
Alejandro Rodríguez González, Marcos Martínez Romero, Roberto Costumero, Mark D. Wilkinson, Ernestina Menasalvas Ruiz
Erratum to: Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases. PACBB (2015)
Alejandro Rodríguez González, Marcos Martínez Romero, Roberto Costumero, Mark D. Wilkinson, Ernestina Menasalvas Ruiz
Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases. PACBB (2015)
Benjamin M. Good, Gavin Ha, Chi K. Ho, Mark D. Wilkinson
OntoLoki: an automatic, instance-based method for the evaluation of biological ontologies on the Semantic Web. CoRR (2015)
Beatriz García Jiménez, Mark D. Wilkinson
Automatic annotation of bioinformatics workflows with biomedical ontologies. CoRR (2014)
Mikel Egaña Aranguren, Alejandro Rodríguez González, Mark D. Wilkinson
Executing SADI services in Galaxy. J. Biomed. Semant. 5 (2014)
Alejandro Rodríguez González, Alison Callahan, José Cruz-Toledo, Adrian Garcia, Mikel Egaña Aranguren, Michel Dumontier, Mark D. Wilkinson
Automatically exposing OpenLifeData via SADI semantic Web Services. J. Biomed. Semant. 5 (2014)
Wasiu A. Akanni, Christopher J. Creevey, Mark D. Wilkinson, Davide Pisani
L.U.St: a tool for approximated maximum likelihood supertree reconstruction. BMC Bioinform. 15 (2014)
Marco Roos, Alasdair J. G. Gray, Andra Waagmeester, Mark Thompson, Rajaram Kaliyaperumal, Eelke van der Horst, Barend Mons, Mark D. Wilkinson
Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices. SWAT4LS (2014)
Alejandro Rodríguez González, Marcos Martínez Romero, Mikel Egaña Aranguren, Mark D. Wilkinson
Nanopublishing Clinical Diagnoses: Tracking Diagnostic Knowledge Base Content and Utilization. CBMS (2014)
Beatriz García Jiménez, Mark D. Wilkinson
Automatic Annotation of Bioinformatics Workflows with Biomedical Ontologies. ISoLA (2) (2014)
Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semant. 5 (2014)
Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5 (2014)
Joanne S. Luciano, Grant P. Cumming, Eva Kahana, Mark D. Wilkinson, Elizabeth H. Brooks, Holly Jarman, Deborah L. McGuinness, Minna S. Levine
Health Web Science. Found. Trends Web Sci. 4 (4) (2014)
Benjamin P. Vandervalk, E. Luke McCarthy, Mark D. Wilkinson
SHARE: A Web Service Based Framework for Distributed Querying and Reasoning on the Semantic Web CoRR (2013)
Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Erick Antezana, Chris Mungall, Alejandro Rodríguez González, Mark D. Wilkinson
OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows. J. Biomed. Semant. 4 (2013)
Alejandro Rodriguez Iglesias, Mikel Egaña Aranguren, Alejandro Rodríguez González, Mark D. Wilkinson
Plant Pathogen Interactions Ontology (PPIO). IWBBIO (2013)
Ian Wood, Benjamin P. Vandervalk, E. Luke McCarthy, Mark D. Wilkinson
OWL-DL Domain-Models as Abstract Workflows. ISoLA (2) (2012)
E. Luke McCarthy, Benjamin P. Vandervalk, Mark D. Wilkinson
SPARQL Assist language-neutral query composer. BMC Bioinform. 13 (S-1) (2012)
Alejandro Rodríguez González, Javier Torres Niño, Miguel Angel Mayer, Giner Alor-Hernández, Mark D. Wilkinson
Analysis of a Multilevel Diagnosis Decision Support System and Its Implications: A Case Study. Comput. Math. Methods Medicine 2012 (2012)
Joost N. Kok, Anna-Lena Lamprecht, Fons J. Verbeek, Mark D. Wilkinson
Bioscientific Data Processing and Modeling. ISoLA (2) (2012)
Soroush Samadian, Bruce McManus, Mark D. Wilkinson
Extending and encoding existing biological terminologies and datasets for use in the reasoned semantic web. J. Biomed. Semant. 3 (2012)
Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semant. 2 (2011)
Mark D. Wilkinson, Benjamin P. Vandervalk, E. Luke McCarthy
The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation. J. Biomed. Semant. 2 (2011)
Benjamin P. Vandervalk, Michel Dumontier, E. Luke McCarthy, Mark D. Wilkinson
SADI for GMOD: Semantic Web Services for Model Organism Databases. CSWS (2011)
Mark D. Wilkinson, E. Luke McCarthy
The SADI plug-in to IO informatics' sentient knowledge explorer. SWAT4LS (2011)
Joost N. Kok, Anna-Lena Lamprecht, Mark D. Wilkinson
Tools in Scientific Workflow Composition. ISoLA (1) (2010)
Benjamin P. Vandervalk, E. Luke McCarthy, Mark D. Wilkinson
SHARE & The Semantic Web - This Time it's Personal! OWLED (2010)
Mark D. Wilkinson, E. Luke McCarthy, Benjamin P. Vandervalk, David Withers, Edward A. Kawas, Soroush Samadian
SADI, SHARE, and the in silico scientific method. BMC Bioinform. 11 (S-12) (2010)
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1 (2010)
David Withers, Edward A. Kawas, E. Luke McCarthy, Benjamin P. Vandervalk, Mark D. Wilkinson
Semantically-Guided Workflow Construction in Taverna: The SADI and BioMoby Plug-Ins. ISoLA (1) (2010)
E. Luke McCarthy, Benjamin P. Vandervalk, Mark D. Wilkinson
SPARQL Assist Language-Neutral Query Composer. SWAT4LS (2010)
E. Luke McCarthy, Benjamin P. Vandervalk, Mark D. Wilkinson
SPARQL Assist Language-Neutral Query Composer CoRR (2010)
Edward A. Kawas, Mark D. Wilkinson
OWL2Perl: creating Perl modules from OWL class definitions. Bioinform. 26 (18) (2010)
Mark D. Wilkinson, Benjamin P. Vandervalk, E. Luke McCarthy
SADI Semantic Web Services - 'cause you can't always GET what you want!. APSCC (2009)
Benjamin P. Vandervalk, E. Luke McCarthy, Mark D. Wilkinson
Moby and Moby 2: Creatures of the Deep (Web). Briefings Bioinform. 10 (2) (2009)
Benjamin M. Good, Joseph T. Tennis, Mark D. Wilkinson
Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics. BMC Bioinform. 10 (2009)
Benjamin P. Vandervalk, E. Luke McCarthy, Mark D. Wilkinson
SHARE: A Semantic Web Query Engine for Bioinformatics. ASWC (2009)
Benjamin P. Vandervalk, E. Luke McCarthy, Mark D. Wilkinson
Optimization of Distributed SPARQL Queries Using Edmonds' Algorithm and Prim's Algorithm. CSE (1) (2009)
Cartik R. Kothari, Mark D. Wilkinson
Structured Representation of Biomedical Experiments: A Bottom-Up Approach. IKE (2008)
Michael DiBernardo, Rachel Pottinger, Mark D. Wilkinson
Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework. J. Biomed. Informatics 41 (5) (2008)
Byron Yu-Lin Kuo, Thomas Hentrich, Benjamin M. Good, Mark D. Wilkinson
Tag clouds for summarizing web search results. WWW (2007)
Young C. Song, Edward A. Kawas, Benjamin M. Good, Mark D. Wilkinson, Scott J. Tebbutt
DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs. Bioinform. 23 (6) (2007)
Benjamin M. Good, Mark D. Wilkinson
Ontology engineering using volunteer labor. WWW (2007)
Paul M. K. Gordon, Edward A. Kawas, Mark D. Wilkinson, Christoph W. Sensen
Using a Novel Data Transformation Technique to Provide the EMBOSS Software Suite as Semantic Web Services. BIBM (2007)
Cartik R. Kothari, Mark D. Wilkinson
From chaos to order: A generic, distributed, ontology based annotation system. IKE (2007)
Benjamin M. Good, Mark D. Wilkinson
The Life Sciences Semantic Web is Full of Creeps! Briefings Bioinform. 7 (3) (2006)
Mark D. Wilkinson
Gbrowse Moby: a Web-based browser for BioMoby Services. Source Code Biol. Medicine 1 (2006)
Benjamin M. Good, Edward A. Kawas, Byron Yu-Lin Kuo, Mark D. Wilkinson
iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website. BMC Bioinform. 7 (2006)
Benjamin M. Good, Erin M. Tranfield, Poh C. Tan, Marlene Shehata, Gurpreet K. Singhera, John Gosselink, Elena B. Okon, Mark D. Wilkinson
Fast, Cheap and Out of Control: A Zero Curation Model for Ontology Development. Pacific Symposium on Biocomputing (2006)
Edward A. Kawas, Martin Senger, Mark D. Wilkinson
BioMoby extensions to the Taverna workflow management and enactment software. BMC Bioinform. 7 (2006)
Phillip W. Lord, Sean Bechhofer, Mark D. Wilkinson, Gary S. Schiltz, Damian Gessler, Duncan Hull, Carole A. Goble, Lincoln Stein
Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt. ISWC (2004)
Mark D. Wilkinson, Matthew Links
BioMOBY: An Open Source Biological Web Services Proposal. Briefings Bioinform. 3 (4) (2002)
Mark D. Wilkinson, David Block, William L. Crosby
Genquire: genome annotation browser/editor. Bioinform. 18 (10) (2002)