Alison Callahan

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 19

Top Topics

Learning Models

Healthcare Professionals

Spinal Cord Injury

Top Venues

npj Digit. Medicine

J. Biomed. Semant.

J. Am. Medical Informatics Assoc.

Publications

Alison Callahan, Duncan C. McElfresh, Juan M. Banda, Gabrielle Bunney, Danton Char, Jonathan H. Chen, Conor K. Corbin, Debadutta Dash, Norman L. Downing, Sneha S. Jain, Nikesh Kotecha, Jonathan Masterson, Michelle M. Mello, Keith E. Morse, Srikar Nallan, Abby Pandya, Anurang Revri, Aditya Sharma, Christopher D. Sharp, Rahul Thapa, Michael Wornow, Alaa Youssef, Michael A. Pfeffer, Nigam H. Shah
Standing on FURM ground - A framework for evaluating Fair, Useful, and Reliable AI Models in healthcare systems. CoRR (2024)
Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo Pontes Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher D. Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah
MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records. AAAI (2024)
Yizhe Xu, Katelyn K. Bechler, Alison Callahan, Nigam Shah
Principled estimation and evaluation of treatment effect heterogeneity: A case study application to dabigatran for patients with atrial fibrillation. J. Biomed. Informatics 143 (2023)
Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo P. Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher D. Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah
MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records. CoRR (2023)
Michael Wornow, Elsie Gyang Ross, Alison Callahan, Nigam H. Shah
APLUS: A Python library for usefulness simulations of machine learning models in healthcare. J. Biomed. Informatics 139 (2023)
Jonathan Lu, Amelia Sattler, Samantha Wang, Ali Raza Khaki, Alison Callahan, Scott L. Fleming, Rebecca Fong, Benjamin Ehlert, Ron C. Li, Lisa Shieh, Kavitha Ramchandran, Michael Gensheimer, Sarah Chobot, Stephen Pfohl, Siyun Li, Kenny Shum, Nitin Parikh, Priya Desai, Briththa Seevaratnam, Melanie Hanson, Margaret Smith, Yizhe Xu, Arjun Gokhale, Steven Lin, Michael A. Pfeffer, Winifred Teuteberg, Nigam H. Shah
Considerations in the reliability and fairness audits of predictive models for advance care planning. Frontiers Digit. Health 4 (2022)
Julian Genkins, Dev Dash, Lillian Sung, Saurabh Gombar, Alison Callahan
Real-World Data at the Point-of-Care: Exploring Education Needs Across All Stakeholders. AMIA (2022)
Jason Alan Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Myungsun Kang, Ruisi Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José David Posada, John Michael Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Michio Broad, Yanis Labrak, Shlok S. Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz
BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing. CoRR (2022)
Jason A. Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Sunny Kang, Rosaline Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José D. Posada, John M. Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Broad, Yanis Labrak, Shlok Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz
BigBio: A Framework for Data-Centric Biomedical Natural Language Processing. NeurIPS (2022)
Alison Callahan, Vladimir Polony, José D. Posada, Juan M. Banda, Saurabh Gombar, Nigam H. Shah
ACE: the Advanced Cohort Engine for searching longitudinal patient records. J. Am. Medical Informatics Assoc. 28 (7) (2021)
Alison Callahan, Ethan Steinberg, Jason A. Fries, Saurabh Gombar, Birju S. Patel, Conor K. Corbin, Nigam H. Shah
Estimating the efficacy of symptom-based screening for COVID-19. npj Digit. Medicine 3 (2020)
Jason A. Fries, Ethan Steinberg, Saelig Khattar, Scott L. Fleming, José D. Posada, Alison Callahan, Nigam H. Shah
Trove: Ontology-driven weak supervision for medical entity classification. CoRR (2020)
Sehj Kashyap, Saurabh Gombar, Steve Yadlowsky, Alison Callahan, Jason A. Fries, Benjamin A. Pinsky, Nigam H. Shah
Measure what matters: Counts of hospitalized patients are a better metric for health system capacity planning for a reopening. J. Am. Medical Informatics Assoc. 27 (7) (2020)
Alison Callahan, Jason A. Fries, Christopher Ré, James I Huddleston III, Nicholas J. Giori, Scott L. Delp, Nigam H. Shah
Medical device surveillance with electronic health records. CoRR (2019)
Saurabh Gombar, Alison Callahan, Robert M. Califf, Robert A. Harrington, Nigam H. Shah
It is time to learn from patients like mine. npj Digit. Medicine 2 (2019)
Alison Callahan, Jason A. Fries, Christopher Ré, James I Huddleston III, Nicholas J. Giori, Scott L. Delp, Nigam H. Shah
Medical device surveillance with electronic health records. npj Digit. Medicine 2 (2019)
Noémie Elhadad, Iñigo Urteaga, Alison Callahan, Jenna Reps, Patrick B. Ryan
Learning Across a Healthcare Data Network to Improve Model Robustness and Evidence Reliability. AMIA (2019)
Alejandro Schuler, Vincent X. Liu, Joe Wan, Alison Callahan, Madeleine Udell, David E. Stark, Nigam H. Shah
Discovering Patient Phenotypes Using Generalized Low Rank Models. PSB (2016)
Alison Callahan, Saminda Abeyruwan, Hassan Al-Ali, Kunie Sakurai, Adam R. Ferguson, Phillip G. Popovich, Nigam H. Shah, Ubbo Visser, John L. Bixby, Vance P. Lemmon
RegenBase: a knowledge base of spinal cord injury biology for translational research. Database J. Biol. Databases Curation 2016 (2016)
David J. Odgers, Rave Harpaz, Alison Callahan, Gregor Stiglic, Nigam H. Shah
Analyzing Search Behavior of Healthcare Professionals for Drug Safety Surveillance. Pacific Symposium on Biocomputing (2015)
Alison Callahan, Juan Cifuentes, Michel Dumontier
An evidence-based approach to identify aging-related genes in Caenorhabditis elegans. BMC Bioinform. 16 (2015)
Alejandro Rodríguez González, Alison Callahan, José Cruz-Toledo, Adrian Garcia, Mikel Egaña Aranguren, Michel Dumontier, Mark D. Wilkinson
Automatically exposing OpenLifeData via SADI semantic Web Services. J. Biomed. Semant. 5 (2014)
Michel Dumontier, Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Vincent Emonet, François Belleau, Arnaud Droit
Bio2RDF Release 3: A larger, more connected network of Linked Data for the Life Sciences. ISWC (Posters & Demos) (2014)
Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5 (2014)
Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Michel Dumontier
Bio2RDF Release 2: Improved Coverage, Interoperability and Provenance of Life Science Linked Data. ESWC (2013)
Alison Callahan, Michel Dumontier
Ovopub: Modular data publication with minimal provenance CoRR (2013)
Alison Callahan, Michel Dumontier, Jodi Schneider, Lars Svensson
1st Semantic Web Technologies for Libraries and Readers (STLR 2011). Bull. IEEE Tech. Comm. Digit. Libr. 9 (1) (2013)
Jose Cruz-Toledo, Alison Callahan, Michel Dumontier
A Large-scale Gene-centric Semantic Web Knowledge Base for Molecular Biology. ORE (2013)
Alison Callahan, Jose Cruz-Toledo, Michel Dumontier
Ontology-Based Querying with Bio2RDF's Linked Open Data. J. Biomed. Semant. 4 (S-1) (2013)
Alison Callahan, Michel Dumontier
HyQue: A Semantic Web tool for evaluating scientific hypotheses. ICBO (2013)
Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Dana Klassen, Giovanni Tumarello, Michel Dumontier
Improved Dataset Coverage and Interoperability with Bio2RDF Release 2. SWAT4LS (2012)
Alison Callahan, Michel Dumontier
Evaluating Scientific Hypotheses Using the SPARQL Inferencing Notation. ESWC (2012)
Alison Callahan, Michel Dumontier, Nigam H. Shah
HyQue: evaluating hypotheses using Semantic Web technologies. J. Biomed. Semant. 2 (S-2) (2011)
Alison Callahan, Stephen Hockema, Gunther Eysenbach
Contextual cocitation: Augmenting cocitation analysis and its applications. J. Assoc. Inf. Sci. Technol. 61 (6) (2010)