Samuele Garda

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 12

Top Topics

Natural Language

Scientific Literature

Top Venues

Database J. Biol. Databases Curation

Publications

Samuele Garda, Ulf Leser
BELHD: Improving Biomedical Entity Linking with Homonoym Disambiguation. CoRR (2024)
Mario Sänger, Samuele Garda, Xing David Wang, Leon Weber-Genzel, Pia Droop, Benedikt Fuchs, Alan Akbik, Ulf Leser
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools. CoRR (2024)
Samuele Garda, Leon Weber-Genzel, Robert Martin, Ulf Leser
BELB: a biomedical entity linking benchmark. Bioinform. 39 (10) (2023)
Samuele Garda, Leon Weber-Genzel, Robert Martin, Ulf Leser
BELB: a Biomedical Entity Linking Benchmark. CoRR (2023)
Samuele Garda, Freyda Lenihan-Geels, Sebastian Proft, Stefanie Hochmuth, Markus Schuelke, Dominik Seelow, Ulf Leser
RegEl corpus: identifying DNA regulatory elements in the scientific literature. Database J. Biol. Databases Curation 2022 (2022) (2022)
Leon Weber, Mario Sänger, Samuele Garda, Fabio Barth, Christoph Alt, Ulf Leser
Chemical-protein relation extraction with ensembles of carefully tuned pretrained language models. Database J. Biol. Databases Curation 2022 (2022) (2022)
Jason Alan Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Myungsun Kang, Ruisi Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José David Posada, John Michael Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Michio Broad, Yanis Labrak, Shlok S. Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz
BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing. CoRR (2022)
Jason A. Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Sunny Kang, Rosaline Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José D. Posada, John M. Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Broad, Yanis Labrak, Shlok Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz
BigBio: A Framework for Data-Centric Biomedical Natural Language Processing. NeurIPS (2022)
Leon Weber, Jannes Münchmeyer, Samuele Garda, Ulf Leser
Extend, don't rebuild: Phrasing conditional graph modification as autoregressive sequence labelling. EMNLP (1) (2021)
Julian Risch, Samuele Garda, Ralf Krestel
Hierarchical Document Classification as a Sequence Generation Task. JCDL (2020)
Ivan Namor, Pietro Totis, Samuele Garda, Manfred Stede
Mining Italian Short Argumentative Texts. CLiC-it (2019)
Julian Risch, Samuele Garda, Ralf Krestel
Book Recommendation Beyond the Usual Suspects - Embedding Book Plots Together with Place and Time Information. ICADL (2018)