Jamie P. McCusker

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 38

Top Topics

Graph Construction

Clinical Decision Support

Scientific Knowledge

Probabilistic Knowledge

Top Venues

Publications

Henrique Santos, Paulo Pinheiro, Jamie P. McCusker, Sabbir M. Rashid, Deborah L. McGuinness
SciKG: Tutorial on Building Scientific Knowledge Graphs from Data, Data Dictionaries, and Codebooks. ESWC Workshops (2023)
Jamie P. McCusker, Deborah L. McGuinness
Whyis 2: An Open Source Framework for Knowledge Graph Development and Research. ESWC (2023)
Jamie P. McCusker
LOKE: Linked Open Knowledge Extraction for Automated Knowledge Graph Construction. CoRR (2023)
Jade S. Franklin, Hannah Powers, John S. Erickson, Jamie P. McCusker, Deborah L. McGuinness, Kristin P. Bennett
An Ontology for Reasoning About Fairness in Regression and Machine Learning. KGSWC (2023)
Oshani Seneviratne, Amar K. Das, Shruthi Chari, Nkechinyere N. Agu, Sabbir M. Rashid, Jamie P. McCusker, Jade S. Franklin, Miao Qi, Kristin P. Bennett, Ching-Hua Chen, James A. Hendler, Deborah L. McGuinness
Semantically enabling clinical decision support recommendations. J. Biomed. Semant. 14 (1) (2023)
Sabbir M. Rashid, Jamie P. McCusker, Daniel M. Gruen, Oshani Seneviratne, Deborah L. McGuinness
A Concise Ontology to Support Research on Complex, Multimodal Clinical Reasoning. ESWC (2023)
Jade S. Franklin, Karan Bhanot, Mohamed F. Ghalwash, Kristin P. Bennett, Jamie P. McCusker, Deborah L. McGuinness
An Ontology for Fairness Metrics. AIES (2022)
Ibrahim Abdelaziz, Julian Dolby, Jamie P. McCusker, Kavitha Srinivas
Can Machines Read Coding Manuals Yet? - A Benchmark for Building Better Language Models for Code Understanding. AAAI (2022)
Henrique Santos, Jamie P. McCusker, Deborah L. McGuinness
Geospatial Reasoning with Shapefiles for Supporting Policy Decisions. CoRR (2021)
Jamie P. McCusker, Michael Deagen, Tolulomo Fateye, Anya Wallace, Sabbir M. Rashid, Deborah L. McGuinness
Creating and Visualizing the Materials Science Knowledge Graph with Whyis. ISWC (Posters/Demos/Industry) (2021)
Ibrahim Abdelaziz, Julian Dolby, Jamie P. McCusker, Kavitha Srinivas
A Toolkit for Generating Code Knowledge Graphs. K-CAP (2021)
Ibrahim Abdelaziz, Julian Dolby, Jamie P. McCusker, Kavitha Srinivas
Can Machines Read Coding Manuals Yet? - A Benchmark for Building Better Language Models for Code Understanding. CoRR (2021)
Henrique Santos, Alice Mulvehill, John S. Erickson, Jamie P. McCusker, Minor Gordon, Owen Xie, Samuel Stouffer, Gerard Capraro, Alex Pidwerbetsky, John Burgess, Allan Berlinsky, Kurt A. Turck, Jonathan D. Ashdown, Deborah L. McGuinness
The Dynamic Spectrum Access Policy Framework in Action. ISWC (Demos/Industry) (2020)
Ibrahim Abdelaziz, Kavitha Srinivas, Julian Dolby, Jamie P. McCusker
A Demonstration of CodeBreaker: A Machine Interpretable Knowledge Graph for Code. ISWC (Demos/Industry) (2020)
Jay D. S. Franklin, Shruthi Chari, Morgan Foreman, Oshani Seneviratne, Daniel M. Gruen, Jamie P. McCusker, Amar K. Das, Deborah L. McGuinness
Knowledge Extraction of Cohort Characteristics in Research Publications. AMIA (2020)
Henrique Santos, Alice Mulvehill, John S. Erickson, Jamie P. McCusker, Minor Gordon, Owen Xie, Samuel Stouffer, Gerard Capraro, Alex Pidwerbetsky, John Burgess, Allan Berlinsky, Kurt A. Turck, Jonathan D. Ashdown, Deborah L. McGuinness
A Semantic Framework for Enabling Radio Spectrum Policy Management and Evaluation. CoRR (2020)
Jamie P. McCusker, Neha Keshan, Sabbir M. Rashid, Michael Deagen, L. Catherine Brinson, Deborah L. McGuinness
NanoMine: A Knowledge Graph for Nanocomposite Materials Science. ISWC (2) (2020)
Kavitha Srinivas, Ibrahim Abdelaziz, Julian Dolby, Jamie P. McCusker
Graph4Code: A Machine Interpretable Knowledge Graph for Code. CoRR (2020)
Henrique Santos, Alice Mulvehill, John S. Erickson, Jamie P. McCusker, Minor Gordon, Owen Xie, Samuel Stouffer, Gerard Capraro, Alex Pidwerbetsky, John Burgess, Allan Berlinsky, Kurt A. Turck, Jonathan D. Ashdown, Deborah L. McGuinness
A Semantic Framework for Enabling Radio Spectrum Policy Management and Evaluation. ISWC (2) (2020)
Shruthi Chari, Miao Qi, Nkechinyere N. Agu, Oshani Seneviratne, Jamie P. McCusker, Kristin P. Bennett, Amar K. Das, Deborah L. McGuinness
Ontology-enabled Analysis of Study Populations. ISWC (Satellites) (2019)
Shruthi Chari, Miao Qi, Nkechinyere N. Agu, Oshani Seneviratne, Jamie P. McCusker, Kristin P. Bennett, Amar K. Das, Deborah L. McGuinness
Making Study Populations Visible through Knowledge Graphs. CoRR (2019)
Alexander New, Miao Qi, Shruthi Chari, Sabbir M. Rashid, Oshani Seneviratne, Jamie P. McCusker, John S. Erickson, Deborah L. McGuinness, Kristin P. Bennett
Automating Population Health Studies Through Semantics and Statistics. SAWSemStats@ISWC (2019)
Nkechinyere N. Agu, Neha Keshan, Shruthi Chari, Oshani Seneviratne, Jamie P. McCusker, Deborah L. McGuinness
G-PROV: Provenance Management for Clinical Practice Guidelines. SeWeBMeDa@ISWC (2019)
Shruthi Chari, Miao Qi, Nkechinyere N. Agu, Oshani Seneviratne, Jamie P. McCusker, Kristin P. Bennett, Amar K. Das, Deborah L. McGuinness
Making Study Populations Visible Through Knowledge Graphs. ISWC (2) (2019)
Jamie P. McCusker, Michel Dumontier, Shruthi Chari, Joanne S. Luciano, Deborah L. McGuinness
A Linked Data Representation for Summary Statistics and Grouping Criteria. SAWSemStats@ISWC (2019)
Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness
Reflections on: Finding Melanoma Drugs Through a Probabilistic Knowledge Graph. JT@ISWC (2019)
Oshani Seneviratne, Amar K. Das, Shruthi Chari, Nkechinyere N. Agu, Sabbir M. Rashid, Ching-Hua Chen, Jamie P. McCusker, James A. Hendler, Deborah L. McGuinness
Enabling Trust in Clinical Decision Support Recommendations through Semantics. SeWeBMeDa@ISWC (2019)
Oshani Seneviratne, Sabbir M. Rashid, Shruthi Chari, Jamie P. McCusker, Kristin P. Bennett, James A. Hendler, Deborah L. McGuinness
Knowledge Integration for Disease Characterization: A Breast Cancer Example. CoRR (2018)
Oshani Seneviratne, Sabbir M. Rashid, Shruthi Chari, Jamie P. McCusker, Kristin P. Bennett, Jim Hendler, Deborah L. McGuinness
Ontology-enabled Breast Cancer Characterization. ISWC (P&D/Industry/BlueSky) (2018)
Jamie P. McCusker, Sabbir M. Rashid, Nkechinyere Agu, Kristin P. Bennett, Deborah L. McGuinness
Developing Scientific Knowledge Graphs Using Whyis. SemSci@ISWC (2018)
Oshani Seneviratne, Sabbir M. Rashid, Shruthi Chari, Jamie P. McCusker, Kristin P. Bennett, James A. Hendler, Deborah L. McGuinness
Knowledge Integration for Disease Characterization: A Breast Cancer Example. ISWC (2) (2018)
Paulo Pinheiro, Marcello Peixoto Bax, Henrique Santos, Sabbir M. Rashid, Zhicheng Liang, Yue Liu, Yarden Ne'eman, Jamie P. McCusker, Deborah L. McGuinness
Annotating Diverse Scientific Data With HAScO. ONTOBRAS (2018)
Jamie P. McCusker, Sabbir M. Rashid, Nkechinyere Agu, Kristin P. Bennett, Deborah L. McGuinness
The Whyis Knowledge Graph Framework in Action. ISWC (P&D/Industry/BlueSky) (2018)
Sabbir M. Rashid, Katherine Chastain, Jeanette A. Stingone, Deborah L. McGuinness, Jamie P. McCusker
The Semantic Data Dictionary Approach to Data Annotation & Integration. SemSci@ISWC (2017)
Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness
Finding melanoma drugs through a probabilistic knowledge graph. PeerJ Comput. Sci. 3 (2017)
Jamie P. McCusker, Sabbir M. Rashid, Zhicheng Liang, Yue Liu, Katherine Chastain, Paulo Pinheiro, Jeanette A. Stingone, Deborah L. McGuinness
: An Exposure and Child Health Ontology. WebSci (2017)
Vipula Rawte, Jamie P. McCusker, He Zhao, L. Catherine Brinson, Wei Chen, Linda Schadler, Deborah L. McGuinness
An Ontology for a Polymer Nanocomposite Community Data Resource. WebSci (2017)
Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness
Finding melanoma drugs through a probabilistic knowledge graph. PeerJ Prepr. 4 (2016)
Ruth E. Duerr, Jamie P. McCusker, Mark A. Parsons, Siri Jodha Singh Khalsa, Peter L. Pulsifer, Cassidy Thompson, Rui Yan, Deborah L. McGuinness, Peter Fox
Formalizing the semantics of sea ice. Earth Sci. Informatics 8 (1) (2015)
Jamie P. McCusker, Rui Yan, Kusum Solanki, John S. Erickson, Cynthia Chang, Michel Dumontier, Jonathan S. Dordick, Deborah L. McGuinness
A Nanopublication Framework for Biological Networks using Cytoscape.js. ICBO (2014)
John S. Erickson, Katherine Chastain, Zachary Fry, Jamie P. McCusker, Rui Yan, Evan W. Patton, Deborah L. McGuinness
Identifying First Responder Communities Using Social Network Analysis. ISWC (Posters & Demos) (2014)
Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5 (2014)
Jamie P. McCusker, Deborah L. McGuinness, Jeongmin Lee, Chavon Thomas, Paul Courtney, Zaria Tatalovich, Noshir S. Contractor, Glen D. Morgan, Abdul R. Shaikh
Towards Next Generation Health Data Exploration: A Data Cube-Based Investigation into Population Statistics for Tobacco. HICSS (2013)
A. Patrice Seyed, Timothy Lebo, Evan W. Patton, Jamie P. McCusker, Deborah L. McGuinness
SemantEco: a next-generation web observatory. WWW (Companion Volume) (2013)
Jamie P. McCusker, Timothy Lebo, Michael Krauthammer, Deborah L. McGuinness
Next Generation Cancer Data Discovery, Access, and Integration Using Prizms and Nanopublications. DILS (2013)
Jamie P. McCusker, Jeongmin Lee, Chavon Thomas, Deborah L. McGuinness
Public Health Surveillance Using Global Health Explorer. SATBI+SWIM (2012)
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
A semantic web framework to integrate cancer omics data with biological knowledge. BMC Bioinform. 13 (S-1) (2012)
Jamie P. McCusker, Timothy Lebo, Cynthia Chang, Deborah L. McGuinness, Paulo Pinheiro da Silva
Parallel Identities for Managing Open Government Data. IEEE Intell. Syst. 27 (3) (2012)
Helena F. Deus, Eric Prud'hommeaux, Michael Miller, Jun Zhao, James Malone, Tomasz Adamusiak, Jamie P. McCusker, Sudeshna Das, Philippe Rocca-Serra, Ronan Fox, M. Scott Marshall
Translating standards into practice - One Semantic Web API for Gene Expression. J. Biomed. Informatics 45 (4) (2012)
Deborah L. McGuinness, Timothy Lebo, Li Ding, Jamie P. McCusker, Abdul R. Shaikh, Richard P. Moser, Glen D. Morgan, Zaria Tatalovich, Gordon Willis, Bradford W. Hesse, Noshir S. Contractor, Paul Courtney
Towards Semantically Enabled Next Generation Community Health Information Portals: The PopSciGrid Pilot. HICSS (2012)
Jamie P. McCusker, Timothy Lebo, Alvaro Graves, Dominic DiFranzo, Paulo Pinheiro, Deborah L. McGuinness
Functional Requirements for Information Resource Provenance on the Web. IPAW (2012)
Helena F. Deus, Jun Zhao, Jamie P. McCusker, Ronan Fox, Eric Prud'hommeaux, James Malone, Sudeshna Das, Michael Miller, Tomasz Adamusiak, Philippe Rocca-Serra, M. Scott Marshall
Translating standards into practice: one semantic web API for gene expression. SWAT4LS (2011)
Jamie P. McCusker, Joanne S. Luciano, Deborah L. McGuinness
Towards an Ontology for Conceptual Modeling. ICBO (2011)
Li Ding, James Michaelis, Jamie P. McCusker, Deborah L. McGuinness
Linked provenance data: A semantic Web-based approach to interoperable workflow traces. Future Gener. Comput. Syst. 27 (6) (2011)
Jamie P. McCusker, Timothy Lebo, Li Ding, Cynthia Chang, Paulo Pinheiro da Silva, Deborah L. McGuinness
Where did you hear that? Information and the Sources They Come From. LISC (2011)
Joanne S. Luciano, Bosse Andersson, Colin R. Batchelor, Olivier Bodenreider, Tim Clark, Christine K. Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter J. Kos, Julia Kozlovsky, Timothy Lebo, M. Scott Marshall, Jamie P. McCusker, Deborah L. McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud'hommeaux, Matthias Samwald, Lynn M. Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier
The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. J. Biomed. Semant. 2 (S-2) (2011)
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
Analysis Of Cancer Omics Data In A Semantic Web Framework CoRR (2010)
Harry Halpin, Patrick J. Hayes, Jamie P. McCusker, Deborah L. McGuinness, Henry S. Thompson
When owl: sameAs Isn't the Same: An Analysis of Identity in Linked Data. ISWC (1) (2010)
Jamie P. McCusker, Deborah L. McGuinness
Towards Identity in Linked Data. OWLED (2010)
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
Analysis of Cancer Omics Data In A Semantic Web Framework. SWAT4LS (2010)
Jamie P. McCusker, Deborah L. McGuinness
Explorations into the Provenance of High Throughput Biomedical Experiments. IPAW (2010)
Jamie P. McCusker, Joshua A. Phillips, Alejandra N. González-Beltrán, Anthony Finkelstein, Michael Krauthammer
Semantic web data warehousing for caGrid. BMC Bioinform. 10 (S-10) (2009)
Songhua Xu, Jamie P. McCusker, Michael Krauthammer
Yale Image Finder (YIF): a new search engine for retrieving biomedical images. Bioinform. 24 (17) (2008)