Kristina M. Hettne

Publication Activity (10 Years)

Years Active: 2008-2020
Publications (10 Years): 6

Top Topics

Poses Challenges

Functional Genomics

Natural Language

Top Venues

J. Biomed. Semant.

BMC Medical Informatics Decis. Mak.

Publications

Simone A. Cammel, Marit S. De Vos, Daphne van Soest, Kristina M. Hettne, Fred Boer, Ewout W. Steyerberg, Hileen Boosman
How to automatically turn patient experience free-text responses into actionable insights: a natural language programming (NLP) approach. BMC Medical Informatics Decis. Mak. 20 (1) (2020)
Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2 (1-2) (2020)
Mitra Ebrahimpoor, Pietro Spitali, Kristina M. Hettne, Roula Tsonaka, Jelle J. Goeman
Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained and Competitive Methods. Briefings Bioinform. 21 (4) (2020)
Peter Wittenburg, Hana Pergl Sustkova, Annalisa Montesanti, Margreet Bloemers, S. H. de Waard, Mark A. Musen, John Graybeal, Kristina M. Hettne, Annika Jacobsen, Robert Pergl, Rob W. W. Hooft, Christine Staiger, Celia W. G. van Gelder, Sebastiaan L. Knijnenburg, A. C. van Arkel, Bert Meerman, Mark D. Wilkinson, Susanna-Assunta Sansone, Philippe Rocca-Serra, Peter McQuilton, Alejandra N. González-Beltrán, G. J. C. Aben, Patrícia Henning, Maria Simone de Menezes Alencar, C. Ribeiro, C. R. L. Silva, Luís Fernando Sayão, Luana Sales, Viviane Veiga, Jefferson Lima, Simone Dib, Paula Xavier dos Santos, R. Murtinho, Jakob Tendel, B. F. Schaap, P. M. Brouwer, A. K. Gavai, Yamine Bouzembrak, Hans J. P. Marvin, Albert Mons, Tobias Kuhn, A. A. Gambardella, Ricardo de Miranda Azevedo, Vesa Muhonen, Mira van der Naald, N. W. Smit, M. J. Buys, Taco F. de Bruin, Fieke Schoots, H. J. E. Goodson, Henry S. Rzepa, Keith G. Jeffery, Hugh P. Shanahan, M. Axton, Veniamin Tkachenko, Anne Deslattes Mays, Natalie Meyers, Michael Conlon, Laurel L. Haak, Erik A. Schultes
The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data. CoRR (2019)
Tareq B. Malas, Roman Kudrin, Sergei Starikov, Dorien Peters, Marco Roos, Peter A. C. 't Hoen, Kristina M. Hettne
Semantic Knowledge Graph Network Features for Drug Repurposing. SWAT4LS (2017)
Saber A. Akhondi, Ewoud Pons, Zubair Afzal, Herman van Haagen, Benedikt F. H. Becker, Kristina M. Hettne, Erik M. van Mulligen, Jan A. Kors
Chemical entity recognition in patents by combining dictionary-based and statistical approaches. Database J. Biol. Databases Curation 2016 (2016)
Eleni Mina, Mark Thompson, Kristina M. Hettne, Willeke M. C. van Roon-Mom, Rajaram Kaliyaperumal, Eelke van der Horst, Katherine Wolstencroft, Barend Mons, Marco Roos
Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease. e-Science (2015)
Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina M. Hettne, Raúl Palma, Eleni Mina, Óscar Corcho, José Manuél Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole A. Goble
Using a suite of ontologies for preserving workflow-centric research objects. J. Web Semant. 32 (2015)
Eleni Mina, Mark Thompson, Rajaram Kaliyaperumal, Jun Zhao, Eelke van der Horst, Zuotian Tatum, Kristina M. Hettne, Erik A. Schultes, Barend Mons, Marco Roos
Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study. J. Biomed. Semant. 6 (2015)
Saber A. Akhondi, Kristina M. Hettne, Eelke van der Horst, Erik M. van Mulligen, Jan A. Kors
Recognition of chemical entities: combining dictionary-based and grammar-based approaches. J. Cheminformatics 7 (S-1) (2015)
Eelke van der Horst, Rajaram Kaliyaperumal, Zuotian Tatum, Mark Thompson, Erik A. Schultes, Eleni Mina, Ivo Fokkema, Johan T. den Dunnen, Marco Roos, Jeroen F. J. Laros, Barend Mons, Kristina M. Hettne, Peter A. C. 't Hoen
Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites. SWAT4LS (2015)
Khalid Belhajjame, Jun Zhao, Daniel Garijo, Kristina M. Hettne, Raúl Palma, Óscar Corcho, José Manuél Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole A. Goble
The Research Object Suite of Ontologies: Sharing and Exchanging Research Data and Methods on the Open Web. CoRR (2014)
Kristina M. Hettne, Reinout van Schouwen, Eleni Mina, Eelke van der Horst, Mark Thompson, Rajaram Kaliyaperumal, Barend Mons, Erik M. van Mulligen, Jan A. Kors, Marco Roos
Explain your data by Concept Profile Analysis Web Services. F1000Research 3 (2014)
Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos
Structuring research methods and data with the research object model: genomics workflows as a case study. J. Biomed. Semant. 5 (2014)
Eelke van der Horst, Marco Roos, Kristina M. Hettne
Workflows and Services for Concept Profile Generation. SWAT4LS (2013)
Eleni Mina, Mark Thompson, Rajaram Kaliyaperumal, Jun Zhao, Kristina M. Hettne, Erik A. Schultes, Marco Roos
Nanopublications for Exposing Experimental Data in the Life-sciences: A Huntington's Disease Case Study. SWAT4LS (2013)
Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos
Structuring research methods and data with the Research Object model: genomics workflows as a case study. CoRR (2013)
Kristina M. Hettne, Katherine Wolstencroft, Khalid Belhajjame, Carole A. Goble, Eleni Mina, Harish Dharuri, David De Roure, Lourdes Verdes-Montenegro, Julián Garrido, Marco Roos
Best Practices for Workflow Design: How to Prevent Workflow Decay. SWAT4LS (2012)
Jun Zhao, José Manuél Gómez-Pérez, Khalid Belhajjame, Graham Klyne, Esteban García-Cuesta, Aleix Garrido, Kristina M. Hettne, Marco Roos, David De Roure, Carole A. Goble
Why workflows break - Understanding and combating decay in Taverna workflows. eScience (2012)
Jun Zhao, Graham Klyne, Piotr Holubowicz, Raúl Palma, Stian Soiland-Reyes, Kristina M. Hettne, José Enrique Ruiz, Marco Roos, Kevin R. Page, José Manuél Gómez-Pérez, David De Roure, Carole A. Goble
RO-Manager: A Tool for Creating and Manipulating Research Objects to Support Reproducibility and Reuse in Sciences. LISC@ISWC (2012)
Kristina M. Hettne, Stian Soiland-Reyes, Graham Klyne, Khalid Belhajjame, Matthew Gamble, Sean Bechhofer, Marco Roos, Óscar Corcho
Workflow forever: semantic web semantic models and tools for preserving and digitally publishing computational experiments. SWAT4LS (2011)
Rob Jelier, Jelle J. Goeman, Kristina M. Hettne, Martijn J. Schuemie, Johan T. den Dunnen, Peter A. C. 't Hoen
Literature-aided interpretation of gene expression data with the weighted global test. Briefings Bioinform. 12 (5) (2011)
David De Roure, Carole A. Goble, Graham Klyne, Marco Roos, Kristina M. Hettne, José Enrique Ruiz, Raúl Palma, José Manuél Gómez-Pérez, Paolo Missier, Khalid Belhajjame
Towards the Preservation of Scientific Workflows. iPRES (2011)
Kristina M. Hettne, Antony J. Williams, Erik M. van Mulligen, Jos Kleinjans, Valery Tkachenko, Jan A. Kors
Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining. J. Cheminformatics 2 (2010)
Kristina M. Hettne, Erik M. van Mulligen, Martijn J. Schuemie, Bob J. A. Schijvenaars, Jan A. Kors
Rewriting and suppressing UMLS terms for improved biomedical term identification. J. Biomed. Semant. 1 (2010)
Kristina M. Hettne, Antony J. Williams, Erik M. van Mulligen, Jos Kleinjans, Valery Tkachenko, Jan A. Kors
Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining (Correction). J. Cheminformatics 2 (2010)
Kristina M. Hettne, Rob H. Stierum, Martijn J. Schuemie, Peter J. M. Hendriksen, Bob J. A. Schijvenaars, Erik M. van Mulligen, Jos Kleinjans, Jan A. Kors
A dictionary to identify small molecules and drugs in free text. Bioinform. 25 (22) (2009)
Erik M. van Mulligen, Montserrat Cases, Kristina M. Hettne, Eva Molero, Marc Weeber, Kevin A. Robertson, Baldomero Oliva, Guillermo de la Calle, Victor Maojo
Model Formulation: Training Multidisciplinary Biomedical Informatics Students: Three Years of Experience. J. Am. Medical Informatics Assoc. 15 (2) (2008)