Martijn J. Schuemie

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 24

Top Topics

Prediction Model

Hierarchical Models

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

BMC Medical Informatics Decis. Mak.

Publications

Christian G. Reich, Anna Ostropolets, Patrick B. Ryan, Peter R. Rijnbeek, Martijn J. Schuemie, Alexander Davydov, Dmitry Dymshyts, George Hripcsak
OHDSI Standardized Vocabularies - a large-scale centralized reference ontology for international data harmonization. J. Am. Medical Informatics Assoc. 31 (3) (2024)
Jianxiao Yang, Martijn J. Schuemie, Xiang Ji, Marc A. Suchard
Massive Parallelization of Massive Sample-Size Survival Analysis. J. Comput. Graph. Stat. 33 (1) (2024)
Qiong Wu, Martijn J. Schuemie, Marc A. Suchard, Patrick B. Ryan, George Hripcsak, Charles A. Rohde, Yong Chen
Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes. J. Biomed. Informatics 145 (2023)
Martijn J. Schuemie, Jenna Reps, Adam Black, Frank J. DeFalco, Lee Evans, Egill A. Fridgeirsson, James P. Gilbert, Chris Knoll, Martin Lavallee, Gowtham A. Rao, Peter R. Rijnbeek, Katy Sadowski, Anthony G. Sena, Joel N. Swerdel, Ross D. Williams, Marc A. Suchard
Health-Analytics Data to Evidence Suite (HADES): Open-Source Software for Observational Research. MedInfo (2023)
Erica A. Voss, Clair Blacketer, Sebastiaan van Sandijk, Maxim Moinat, Michael Kallfelz, Michel van Speybroeck, Daniel Prieto-Alhambra, Martijn J. Schuemie, Peter R. Rijnbeek
European Health Data & Evidence Network - learnings from building out a standardized international health data network. J. Am. Medical Informatics Assoc. 31 (1) (2023)
Joel N. Swerdel, Martijn J. Schuemie, Gayle Murray, Patrick B. Ryan
PheValuator 2.0: Methodological improvements for the PheValuator approach to semi-automated phenotype algorithm evaluation. J. Biomed. Informatics 135 (2022)
Linying Zhang, Yixin Wang, Martijn J. Schuemie, David M. Blei, George Hripcsak
Adjusting for indirectly measured confounding using large-scale propensity score. J. Biomed. Informatics 134 (2022)
Chongliang Luo, Md. Nazmul Islam, Natalie E. Sheils, John Buresh, Martijn J. Schuemie, Jalpa A. Doshi, Rachel M. Werner, David A. Asch, Yong Chen
dPQL: a lossless distributed algorithm for generalized linear mixed model with application to privacy-preserving hospital profiling. J. Am. Medical Informatics Assoc. 29 (8) (2022)
Jenna Marie Reps, Ross D. Williams, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek
Learning patient-level prediction models across multiple healthcare databases: evaluation of ensembles for increasing model transportability. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Jenna Marie Reps, Peter R. Rijnbeek, Alana Cuthbert, Patrick B. Ryan, Nicole Pratt, Martijn J. Schuemie
An empirical analysis of dealing with patients who are lost to follow-up when developing prognostic models using a cohort design. BMC Medical Informatics Decis. Mak. 21 (1) (2021)
Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard
Erratum to: Large-Scale Evidence Generation and Evaluation across a Network of Databases (LEGEND): Assessing Validity Using Hypertension as a Case Study. J. Am. Medical Informatics Assoc. 28 (1) (2021)
Jenna Marie Reps, Patrick B. Ryan, Peter R. Rijnbeek, Martijn J. Schuemie
Design matters in patient-level prediction: evaluation of a cohort vs. case-control design when developing predictive models in observational healthcare datasets. J. Big Data 8 (1) (2021)
Sara Khalid, Cynthia Yang, Clair Blacketer, Talita Duarte-Salles, Sergio Fernández-Bertolín, Chungsoo Kim, Rae Woong Park, Jimyung Park, Martijn J. Schuemie, Anthony G. Sena, Marc A. Suchard, Seng Chan You, Peter R. Rijnbeek, Jenna Marie Reps
A standardized analytics pipeline for reliable and rapid development and validation of prediction models using observational health data. Comput. Methods Programs Biomed. 211 (2021)
Rui Duan, Mary Regina Boland, Zixuan Liu, Yue Liu, Howard H. Chang, Hua Xu, Haitao Chu, Christopher H. Schmid, Christopher B. Forrest, John H. Holmes, Martijn J. Schuemie, Jesse A. Berlin, Jason H. Moore, Yong Chen
Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm. J. Am. Medical Informatics Assoc. 27 (3) (2020)
Rui Duan, Chongliang Luo, Martijn J. Schuemie, Jiayi Tong, C. Jason Liang, Howard H. Chang, Mary Regina Boland, Jiang Bian, Hua Xu, John H. Holmes, Christopher B. Forrest, Sally C. Morton, Jesse A. Berlin, Jason H. Moore, Kevin B. Mahoney, Yong Chen
Learning from local to global: An efficient distributed algorithm for modeling time-to-event data. J. Am. Medical Informatics Assoc. 27 (7) (2020)
Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard
Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND). J. Am. Medical Informatics Assoc. 27 (8) (2020)
Ruijun Chen, Martijn J. Schuemie, Marc A. Suchard, Anna Ostropolets, Linying Zhang, Patrick B. Ryan, George Hripcsak
Evaluation of Large-scale Propensity Score Modeling and Covariate Balance on Potential Unmeasured Confounding in Observational Research. AMIA (2020)
Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard
Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study. J. Am. Medical Informatics Assoc. 27 (8) (2020)
George Hripcsak, David M. Blei, Elias Bareinboim, Martijn J. Schuemie, Linying Zhang
Causal Inference from Observational Healthcare Data: Implications, Impacts and Innovations. AMIA (2020)
Mary Regina Boland, Pradipta Parhi, Li Li, Riccardo Miotto, Robert J. Carroll, Usman Iqbal, Phung-Anh (Alex) Nguyen, Martijn J. Schuemie, Seng Chan You, Donahue Smith, Sean Mooney, Patrick B. Ryan, Yu-Chuan (Jack) Li, Rae Woong Park, Joshua C. Denny, Joel T. Dudley, George Hripcsak, Pierre Gentine, Nicholas P. Tatonetti
Uncovering exposures responsible for birth season - disease effects: a global study. J. Am. Medical Informatics Assoc. 25 (3) (2018)
Jenna Marie Reps, Martijn J. Schuemie, Marc A. Suchard, Patrick B. Ryan, Peter R. Rijnbeek
Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data. J. Am. Medical Informatics Assoc. 25 (8) (2018)
Rave Harpaz, William DuMouchel, Martijn J. Schuemie, Olivier Bodenreider, Carol Friedman, Eric Horvitz, Anna Ripple, Alfred Sorbello, Ryen W. White, Rainer Winnenburg, Nigam H. Shah
Toward multimodal signal detection of adverse drug reactions. J. Biomed. Informatics 76 (2017)
Erica A. Voss, Richard D. Boyce, Patrick B. Ryan, Johan van der Lei, Peter R. Rijnbeek, Martijn J. Schuemie
Accuracy of an automated knowledge base for identifying drug adverse reactions. J. Biomed. Informatics 66 (2017)
Trevor R. Shaddox, Patrick B. Ryan, Martijn J. Schuemie, David Madigan, Marc A. Suchard
Hierarchical models for multiple, rare outcomes using massive observational healthcare databases. Stat. Anal. Data Min. 9 (4) (2016)
Erica A. Voss, Rupa Makadia, Amy Matcho, Qianli Ma, Chris Knoll, Martijn J. Schuemie, Frank J. DeFalco, Ajit Londhe, Vivienne J. Zhu, Patrick B. Ryan
Feasibility and utility of applications of the common data model to multiple, disparate observational health databases. J. Am. Medical Informatics Assoc. 22 (3) (2015)
George Hripcsak, Jon D. Duke, Nigam H. Shah, Christian G. Reich, Vojtech Huser, Martijn J. Schuemie, Marc A. Suchard, Rae Woong Park, Ian Chi Kei Wong, Peter R. Rijnbeek, Johan van der Lei, Nicole Pratt, G. Niklas Norén, Yu-Chuan Li, Paul E. Stang, David Madigan, Patrick B. Ryan
Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers. MedInfo (2015)
Zubair Afzal, Ewoud Pons, Ning Kang, Miriam C. J. M. Sturkenboom, Martijn J. Schuemie, Jan A. Kors
ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus. BMC Bioinform. 15 (2014)
Vivienne J. Zhu, Rupa Makadia, Amy Matcho, Martijn J. Schuemie, Patrick B. Ryan
Transforming NHANES Database to the OMOP Common Data Model. AMIA (2014)
Paul Avillach, Preciosa M. Coloma, Rosa Gini, Martijn J. Schuemie, Fleur Mougin, Jean-Charles Dufour, Giampiero Mazzaglia, Carlo Giaquinto, Carla Fornari, Ron Herings, Mariam Molokhia, Lars Pedersen, Annie Fourrier-Réglat, Marius Fieschi, Miriam C. J. M. Sturkenboom, Johan van der Lei, Antoine Pariente, Gianluca Trifirò
Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project. J. Am. Medical Informatics Assoc. 20 (1) (2013)
Zubair Afzal, Martijn J. Schuemie, Jan C. van Blijderveen, Elif F. Sen, Miriam C. J. M. Sturkenboom, Jan A. Kors
Improving sensitivity of machine learning methods for automated case identification from free-text electronic medical records. BMC Medical Informatics Decis. Mak. 13 (2013)
Martijn J. Schuemie, Dolf Trieschnigg, Edgar Meij
DutchHatTrick: Semantic Query Modeling, ConText, Section Detection, and Match Score Maximization. TREC (2011)
Rob Jelier, Jelle J. Goeman, Kristina M. Hettne, Martijn J. Schuemie, Johan T. den Dunnen, Peter A. C. 't Hoen
Literature-aided interpretation of gene expression data with the weighted global test. Briefings Bioinform. 12 (5) (2011)
Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors
A Concept Annotation System for Clinical Records. SWAT4LS (2010)
Martijn J. Schuemie, Ning Kang, Maarten L. Hekkelman, Jan A. Kors
GeneE: Gene and protein query expansion with disambiguation. Bioinform. 26 (1) (2010)
Kristina M. Hettne, Erik M. van Mulligen, Martijn J. Schuemie, Bob J. A. Schijvenaars, Jan A. Kors
Rewriting and suppressing UMLS terms for improved biomedical term identification. J. Biomed. Semant. 1 (2010)
Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors
A Concept Annotation System for Clinical Records CoRR (2010)
Emma Steele, Allan Tucker, Peter A. C. 't Hoen, Martijn J. Schuemie
Literature-based priors for gene regulatory networks. Bioinform. 25 (14) (2009)
Marco Roos, M. Scott Marshall, Andrew P. Gibson, Martijn J. Schuemie, Edgar Meij, Sophia Katrenko, Willem Robert van Hage, Konstantinos Krommydas, Pieter W. Adriaans
Structuring and extracting knowledge for the support of hypothesis generation in molecular biology. BMC Bioinform. 10 (S-10) (2009)
Kristina M. Hettne, Rob H. Stierum, Martijn J. Schuemie, Peter J. M. Hendriksen, Bob J. A. Schijvenaars, Erik M. van Mulligen, Jos Kleinjans, Jan A. Kors
A dictionary to identify small molecules and drugs in free text. Bioinform. 25 (22) (2009)
Martijn J. Schuemie, Jan A. Kors
Jane: suggesting journals, finding experts. Bioinform. 24 (5) (2008)
Rob Jelier, Martijn J. Schuemie, Peter-Jan Roes, Erik M. van Mulligen, Jan A. Kors
Literature-based concept profiles for gene annotation: The issue of weighting. Int. J. Medical Informatics 77 (5) (2008)
Martijn J. Schuemie, Barend Mons, Marc Weeber, Jan A. Kors
Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification. J. Biomed. Informatics 40 (3) (2007)
Martijn J. Schuemie, Dolf Trieschnigg, Wessel Kraaij
Cross Language Information Retrieval for Biomedical Literature. TREC (2007)
Merel Krijn, Paul M. G. Emmelkamp, Ragnar Olafsson, Martijn J. Schuemie, Charles van der Mast
Do Self-Statements Enhance the Effectiveness of Virtual Reality Exposure Therapy? A Comparative Evaluation in Acrophobia. Cyberpsychology Behav. Soc. Netw. 10 (3) (2007)
Dolf Trieschnigg, Wessel Kraaij, Martijn J. Schuemie
Concept Based Document Retrieval for Genomics Literature. TREC (2006)
Martijn J. Schuemie, Jan A. Kors, Barend Mons
Word Sense Disambiguation in the Biomedical Domain: An Overview. J. Comput. Biol. 12 (5) (2005)
Bob J. A. Schijvenaars, Martijn J. Schuemie, Erik M. van Mulligen, Marc Weeber, Rob Jelier, Barend Mons, Jan A. Kors, Wessel Kraaij
TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization. TREC (2005)
Bob J. A. Schijvenaars, Barend Mons, Marc Weeber, Martijn J. Schuemie, Erik M. van Mulligen, Hester M. Wain, Jan A. Kors
Thesaurus-based disambiguation of gene symbols. BMC Bioinform. 6 (2005)
Erik M. van Mulligen, Mario Diwersy, Bob J. A. Schijvenaars, Marc Weeber, C. Christiaan van der Eijk, Rob Jelier, Martijn J. Schuemie, Jan A. Kors, Barend Mons
Contextual Annotation of Web Pages for Interactive Browsing. MedInfo (2004)
Martijn J. Schuemie, Marc Weeber, Bob J. A. Schijvenaars, Erik M. van Mulligen, C. Christiaan van der Eijk, Rob Jelier, Barend Mons, Jan A. Kors
Distribution of information in biomedical abstracts and full-text publications. Bioinform. 20 (16) (2004)
Rob Jelier, Martijn J. Schuemie, C. Christiaan van der Eijk, Marc Weeber, Erik M. van Mulligen, Bob J. A. Schijvenaars, Barend Mons, Jan A. Kors
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification. TREC (2003)
Martijn J. Schuemie
Effect of an external viewpoint on therapist performance in virtual reality exposure therapy. CHI Extended Abstracts (2002)
Martijn J. Schuemie, Peter van der Straaten, Merel Krijn, Charles van der Mast
Research on Presence in Virtual Reality: A Survey. Cyberpsychology Behav. Soc. Netw. 4 (2) (2001)
Martijn J. Schuemie
Design of virtual reality exposure therapy systems: task analysis. CHI Extended Abstracts (2000)
Jan van den Berg, Martijn J. Schuemie
Information retrieval systems using an associative conceptual space. ESANN (1999)