Tudor Groza

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 17

Top Topics

Domain Knowledge

Evidence Based Medicine

Similarity Metric

Imbalanced Data

Top Venues

Nucleic Acids Res.

J. Biomed. Semant.

J. Biomed. Informatics

BMC Medical Informatics Decis. Mak.

Publications

Tudor Groza, J. Harry Caufield, Dylan Gration, Gareth Baynam, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall, Justin T. Reese
An evaluation of GPT models for phenotype concept recognition. BMC Medical Informatics Decis. Mak. 24 (1) (2024)
Tudor Groza, Honghan Wu, Marcel E. Dinger, Daniel Danis, Coleman Hilton, Anita Bagley, Jon R. Davids, Ling Luo, Zhiyong Lu, Peter N. Robinson
Term-BLAST-like alignment tool for concept recognition in noisy clinical texts. Bioinform. 39 (12) (2023)
Zinaida Perova, Mauricio Martínez, Tushar Mandloi, Federico López-Gómez, Csaba Halmagyi, Alex Follette, Jeremy C. Mason, Steven Newhauser, Dale A. Begley, Debra M. Krupke, Carol J. Bult, Helen E. Parkinson, Tudor Groza
PDCM Finder: an open global research platform for patient-derived cancer models. Nucleic Acids Res. 51 (D1) (2023)
Elliot Sollis, Abayomi Mosaku, Ala Abid, Annalisa Buniello, Maria Cerezo, Laurent Gil, Tudor Groza, Osman Nuri Günes, Peggy Hall, James D. Hayhurst, Arwa Ibrahim, Yue Ji, Sajo John, Elizabeth Lewis, Jacqueline A. L. MacArthur, Aoife McMahon, David Osumi-Sutherland, Kalliope Panoutsopoulou, Zoë May Pendlington, Santhi Ramachandran, Raymund Stefancsik, Jonathan Stewart, Patricia L. Whetzel, Robert J. Wilson, Lucia Hindorff, Fiona Cunningham, Samuel A. Lambert, Michael Inouye, Helen E. Parkinson, Laura W. Harris
The NHGRI-EBI GWAS Catalog: knowledgebase and deposition resource. Nucleic Acids Res. 51 (D1) (2023)
Tudor Groza, Federico López-Gómez, Hamed Haseli Mashhadi, Violeta Muñoz-Fuentes, Osman Nuri Günes, Robert J. Wilson, Pilar Cacheiro, Anthony Frost, Piia Keskivali-Bond, Bora Vardal, Aaron McCoy, Tsz Kwan Cheng, Luis A. Santos, Sara Wells, Damian Smedley, Ann-Marie Mallon, Helen E. Parkinson
The International Mouse Phenotyping Consortium: comprehensive knockout phenotyping underpinning the study of human disease. Nucleic Acids Res. 51 (D1) (2023)
Tudor Groza, J. Harry Caufield, Dylan Gration, Gareth Baynam, Melissa A. Haendel, Peter N. Robinson, Chris Mungall, Justin T. Reese
An evaluation of GPT models for phenotype concept recognition. CoRR (2023)
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9 (2020)
Kent A. Shefchek, Nomi L. Harris, Michael A. Gargano, Nicolas Matentzoglu, Deepak R. Unni, Matthew H. Brush, Dan Keith, Tom Conlin, Nicole A. Vasilevsky, Xingmin Aaron Zhang, James P. Balhoff, Larry Babb, Susan M. Bello, Hannah Blau, Yvonne M. Bradford, Seth Carbon, Leigh Carmody, Lauren E. Chan, Valentina Cipriani, Alayne Cuzick, Maria G. Della Rocca, Nathan A. Dunn, Shahim Essaid, Petra Fey, Christian A. Grove, Jean-Philippe F. Gourdine, Ada Hamosh, Midori A. Harris, Ingo Helbig, Maureen E. Hoatlin, Marcin P. Joachimiak, Simon Jupp, Kenneth B. Lett, Suzanna E. Lewis, Craig McNamara, Zoë May Pendlington, Clare Pilgrim, Tim E. Putman, Vida Ravanmehr, Justin T. Reese, Erin Rooney Riggs, Sofia M. C. Robb, Paola Roncaglia, James Seager, Erik Segerdell, Morgan Similuk, Andrea L. Storm, Courtney Thaxon, Anne E. Thessen, Julius O. B. Jacobsen, Julie A. McMurry, Tudor Groza, Sebastian Köhler, Damian Smedley, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel, Monica C. Munoz-Torres, David Osumi-Sutherland
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 48 (Database-Issue) (2020)
Sebastian Köhler, Leigh Carmody, Nicole A. Vasilevsky, Julius O. B. Jacobsen, Daniel Danis, Jean-Philippe F. Gourdine, Michael A. Gargano, Nomi L. Harris, Nicolas Matentzoglu, Julie A. McMurry, David Osumi-Sutherland, Valentina Cipriani, James P. Balhoff, Tom Conlin, Hannah Blau, Gareth Baynam, Richard Palmer, Dylan Gratian, Hugh J. S. Dawkins, Michael Segal, Anna C. Jansen, Ahmed Muaz, Willie H. Chang, Jenna Bergerson, Stanley J. F. Laulederkind, Zafer Yüksel, Sergi Beltran, Alexandra F. Freeman, Panagiotis I. Sergouniotis, Daniel Durkin, Andrea L. Storm, Marc Hanauer, Michael Brudno, Susan M. Bello, Murat Sincan, Kayli Rageth, Matthew T. Wheeler, Renske Oegema, Halima Lourghi, Maria G. Della Rocca, Rachel Thompson, Francisco Castellanos, James Priest, Charlotte Cunningham-Rundles, Ayushi Hegde, Ruth C. Lovering, Catherine Hajek, Annie Olry, Luigi Notarangelo, Morgan Similuk, Xingmin Aaron Zhang, David Gómez-Andrés, Hanns Lochmüller, Hélène Dollfus, Sergio Rosenzweig, Shruti Marwaha, Ana Rath, Kathleen Sullivan, Cynthia L. Smith, Joshua D. Milner, Dorothée Leroux, Cornelius F. Boerkoel, Amy Klion, Melody C. Carter, Tudor Groza, Damian Smedley, Melissa A. Haendel, Chris Mungall, Peter N. Robinson
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. Nucleic Acids Res. 47 (Database-Issue) (2019)
Richard G. Jackson, Ismail Kartoglu, Clive Stringer, Genevieve Gorrell, Angus Roberts, Xingyi Song, Honghan Wu, Asha Agrawal, Kenneth Lui, Tudor Groza, Damian Lewsley, Doug Northwood, Amos Folarin, Robert Stewart, Richard J. B. Dobson
CogStack - experiences of deploying integrated information retrieval and extraction services in a large National Health Service Foundation Trust hospital. BMC Medical Informatics Decis. Mak. 18 (1) (2018)
Simon Kocbek, Tudor Groza
Extracting Disease-Phenotype Relations from Text with Disease-Phenotype Concept Recognisers and Association Rule Mining. CBMS (2017)
Christopher J. Mungall, Julie A. McMurry, Sebastian Köhler, James P. Balhoff, Charles D. Borromeo, Matthew H. Brush, Seth Carbon, Tom Conlin, Nathan A. Dunn, Mark Engelstad, Erin Foster, Jean-Philippe F. Gourdine, Julius O. B. Jacobsen, Dan Keith, Bryan Laraway, Suzanna E. Lewis, Jeremy NguyenXuan, Kent A. Shefchek, Nicole A. Vasilevsky, Zhou Yuan, Nicole L. Washington, Harry Hochheiser, Tudor Groza, Damian Smedley, Peter N. Robinson, Melissa A. Haendel
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 45 (Database-Issue) (2017)
Sebastian Köhler, Nicole A. Vasilevsky, Mark Engelstad, Erin Foster, Julie A. McMurry, Ségolène Aymé, Gareth Baynam, Susan M. Bello, Cornelius F. Boerkoel, Kym M. Boycott, Michael Brudno, Orion J. Buske, Patrick F. Chinnery, Valentina Cipriani, Laureen E. Connell, Hugh J. S. Dawkins, Laura E. DeMare, Andrew Devereau, Bert B. A. de Vries, Helen V. Firth, Kathleen Freson, Daniel Greene, Ada Hamosh, Ingo Helbig, Courtney Hum, Johanna Jähn, Roger James, Roland Krause, Stanley J. F. Laulederkind, Hanns Lochmüller, Gholson J. Lyon, Soichi Ogishima, Annie Olry, Willem H. Ouwehand, Nikolas Pontikos, Ana Rath, Franz Schaefer, Richard H. Scott, Michael Segal, Panagiotis I. Sergouniotis, Richard Sever, Cynthia L. Smith, Volker Straub, Rachel Thompson, Catherine Turner, Ernest Turro, Marijcke W. M. Veltman, Tom Vulliamy, Jing Yu, Julie von Ziegenweidt, Andreas Zankl, Stephan Züchner, Tomasz Zemojtel, Julius O. B. Jacobsen, Tudor Groza, Damian Smedley, Christopher J. Mungall, Melissa A. Haendel, Peter N. Robinson
The Human Phenotype Ontology in 2017. Nucleic Acids Res. 45 (Database-Issue) (2017)
Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier
The digital revolution in phenotyping. Briefings Bioinform. 17 (5) (2016)
Simon Kocbek, Tudor Groza
Building a dictionary of lexical variants for phenotype descriptors. BioNLP@ACL (2016)
Hasti Ziaimatin, Tudor Groza, Tania Tudorache, Jane Hunter
Modelling expertise at different levels of granularity using semantic similarity measures in the context of collaborative knowledge-curation platforms. J. Intell. Inf. Syst. 47 (3) (2016)
Karin Verspoor, Anika Oellrich, Nigel Collier, Tudor Groza, Philippe Rocca-Serra, Larisa N. Soldatova, Michel Dumontier, Nigam Shah
Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. J. Biomed. Semant. 7 (2016)
Tudor Groza, Tania Tudorache, Peter N. Robinson, Andreas Zankl
Capturing domain knowledge from multiple sources: the rare bone disorders use case. J. Biomed. Semant. 6 (2015)
Anthony N. Nguyen, Jane Hunter, Hamed Hassanzadeh, Diego Mollá, Tudor Groza
Similarity Metrics for Clustering PubMed Abstracts for Evidence Based Medicine. ALTA (2015)
Larisa N. Soldatova, Nigel Collier, Anika Oellrich, Tudor Groza, Karin Verspoor, Philippe Rocca-Serra, Michel Dumontier, Nigam H. Shah
Special issue on bio-ontologies and phenotypes. J. Biomed. Semant. 6 (2015)
Hamed Hassanzadeh, Tudor Groza, Anthony N. Nguyen, Jane Hunter
UQeResearch: Semantic Textual Similarity Quantification. SemEval@NAACL-HLT (2015)
Tudor Groza, Sebastian Köhler, Sandra C. Doelken, Nigel Collier, Anika Oellrich, Damian Smedley, Francisco M. Couto, Gareth Baynam, Andreas Zankl, Peter N. Robinson
Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora. Database J. Biol. Databases Curation 2015 (2015)
Nigel Collier, Anika Oellrich, Tudor Groza
Concept selection for phenotypes and diseases using learn to rank. J. Biomed. Semant. 6 (2015)
Nigel Collier, Tudor Groza, Damian Smedley, Peter N. Robinson, Anika Oellrich, Dietrich Rebholz-Schuhmann
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. Database J. Biol. Databases Curation 2015 (2015)
Suleiman Odat, Tudor Groza, Jane Hunter
Extracting structured data from publications in the Art Conservation Domain. Digit. Scholarsh. Humanit. 30 (2) (2015)
Razan Paul, Tudor Groza, Jane Hunter, Andreas Zankl
Inferring characteristic phenotypes via class association rule mining in the bone dysplasia domain. J. Biomed. Informatics 48 (2014)
Hamed Hassanzadeh, Tudor Groza, Jane Hunter
Identifying scientific artefacts in biomedical literature: The Evidence Based Medicine use case. J. Biomed. Informatics 49 (2014)
Tudor Groza, Karin Verspoor
Automated Generation of Test Suites for Error Analysis of Concept Recognition Systems. ALTA (2014)
Razan Paul, Tudor Groza, Jane Hunter, Andreas Zankl
Semantic interestingness measures for discovering association rules in the skeletal dysplasia domain. J. Biomed. Semant. 5 (2014)
Hamed Hassanzadeh, Tudor Groza, Anthony N. Nguyen, Jane Hunter
Load Balancing for Imbalanced Data Sets: Classifying Scientific Artefacts for Evidence Based Medicine. PRICAI (2014)
Hasti Ziaimatin, Tudor Groza, Jane Hunter
Semantic and Time-Dependent Expertise Profiling Models in Community-Driven Knowledge Curation Platforms. Future Internet 5 (4) (2013)
Tudor Groza, Gunnar Aastrand Grimnes, Siegfried Handschuh, Stefan Decker
From raw publications to Linked Data. Knowl. Inf. Syst. 34 (1) (2013)
Tudor Groza, Tania Tudorache, Michel Dumontier
State of the art and open challenges in community-driven knowledge curation. J. Biomed. Informatics 46 (1) (2013)
Chih-Hao Yu, Tudor Groza, Jane Hunter
Reasoning on Crowd-Sourced Semantic Annotations to Facilitate Cataloguing of 3D Artefacts in the Cultural Heritage Domain. ISWC (2) (2013)
Jodi Schneider, Tudor Groza, Alexandre Passant
A review of argumentation for the Social Semantic Web. Semantic Web 4 (2) (2013)
Tudor Groza, Anika Oellrich, Nigel Collier
Using silver and semi-gold standard corpora to compare open named entity recognisers. BIBM (2013)
Tudor Groza, Jane Hunter, Andreas Zankl
The Bone Dysplasia Ontology: integrating genotype and phenotype information in the skeletal dysplasia domain. BMC Bioinform. 13 (2012)
Razan Paul, Tudor Groza, Andreas Zankl, Jane Hunter
Semantic Similarity-Driven Decision Support in the Skeletal Dysplasia Domain. ISWC (2) (2012)
Tudor Groza, Jane Hunter, Andreas Zankl
Supervised segmentation of phenotype descriptions for the human skeletal phenome using hybrid methods. BMC Bioinform. 13 (2012)
Tudor Groza, Andreas Zankl, Jane Hunter
Experiences with Modeling Composite Phenotypes in the SKELETOME Project. ISWC (2) (2012)
Armin Haller, Tudor Groza, Florian Rosenberg
Interacting with Linked Data via Semantically Annotated Widgets. JIST (2011)
Tudor Groza, Andreas Zankl, Yuan-Fang Li, Jane Hunter
Using Semantic Web Technologies to Build a Community-Driven Knowledge Curation Platform for the Skeletal Dysplasia Domain. ISWC (2) (2011)
Chih-Hao Yu, Tudor Groza, Jane Hunter
High Speed Capture, Retrieval and Rendering of Segment-Based Annotations on 3D Museum Objects. ICADL (2011)
Armin Haller, Tudor Groza
A Novel Approach for Interacting with Linked Open Data. WISE (2011)
Laura Dragan, Renaud Delbru, Tudor Groza, Siegfried Handschuh, Stefan Decker
Linking Semantic Desktop Data to the Web of Data. ISWC (2) (2011)
Tudor Groza, Siegfried Handschuh, Stefan Decker
Capturing Rhetoric and Argumentation Aspects within Scientific Publications. J. Data Semant. 15 (2011)
Laura Dragan, Alexandre Passant, Tudor Groza, Siegfried Handschuh
Publishing Semantic Personal Notes as Linked Data. EKAW (Posters and Demos) (2010)
Jodi Schneider, Alexandre Passant, Tudor Groza, John G. Breslin
Argumentation 3.0: how Semantic Web technologies can improve argumentation modeling in Web 2.0 environments. COMMA (2010)
Tudor Groza, Siegfried Handschuh, Georgeta Bordea
Towards automatic extraction of epistemic items from scientific publications. SAC (2010)
Vít Novácek, Tudor Groza, Siegfried Handschuh, Stefan Decker
CORAAL - Dive into publications, bathe in the knowledge. J. Web Semant. 8 (2-3) (2010)
Laura Dragan, Alexandre Passant, Tudor Groza, Siegfried Handschuh
From Personal Notes to Linked Social Media. AAAI Spring Symposium: Linked Data Meets Artificial Intelligence (2010)
Manfred Hauswirth, Jérôme Euzenat, Owen Friel, Keith Griffin, P. Hession, Brendan Jennings, Tudor Groza, Siegfried Handschuh, Ivana Podnar Zarko, Axel Polleres, Antoine Zimmermann
Towards Consolidated Presence. CollaborateCom (2010)
Tudor Groza, Laura Dragan, Siegfried Handschuh, Stefan Decker
Bridging the Gap between Linked Data and the Semantic Desktop. ISWC (2009)
Tudor Groza, Siegfried Handschuh
A Hybrid Approach Towards Information Expansion based on Shallow and Deep Metadata. KEOD (2009)
Vít Novácek, Tudor Groza, Siegfried Handschuh
Knowledge-based search for oncological literature. CBMS (2009)
Tudor Groza, Siegfried Handschuh, John G. Breslin, Stefan Decker
An Abstract Framework for Modeling Argumentation in Virtual Communities. Int. J. Virtual Communities Soc. Netw. 1 (3) (2009)
Vít Novácek, Tudor Groza, Siegfried Handschuh
CORAAL - Towards Deep Exploitation of Textual Resources in Life Sciences. AIME (2009)
Tudor Groza, Siegfried Handschuh, Knud Möller, Stefan Decker
KonneXSALT: First Steps Towards a Semantic Claim Federation Infrastructure. ESWC (2008)
Tudor Groza, Siegfried Handschuh, John G. Breslin
Adding Provenance and Evolution Information to Modularized Argumentation Models. Web Intelligence (2008)
Christoph Lange, Uldis Bojars, Tudor Groza, John G. Breslin, Siegfried Handschuh
Expressing Argumentative Discussions in Social Media Sites. SDoW@ISWC (2008)
Tudor Groza, Knud Möller, Siegfried Handschuh, Diana Trif, Stefan Decker
SALT: Weaving the Claim Web. ISWC/ASWC (2007)
Tudor Groza, Alexander Schutz, Siegfried Handschuh
SALT: a semantic approach for generating document representations. ACM Symposium on Document Engineering (2007)
Tudor Groza, Siegfried Handschuh, Knud Möller, Stefan Decker
SALT - Semantically Annotated LaTeX for Scientific Publications. ESWC (2007)
Tudor Groza, Alexander Schutz, Siegfried Handschuh
The salt triple: framework editor publisher. ACM Symposium on Document Engineering (2007)
Tudor Groza, Haklae Kim, Siegfried Handschuh
SALT: Semantically Annotated LATEX. SAAW@ISWC (2006)