Nicolas Matentzoglu

ORCID

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 41

Top Venues

CoRR

ICBO

Database J. Biol. Databases Curation

Nucleic Acids Res.

University of Manchester, UK (PHD)

Education History

University of Manchester, UK

PHD

Publications

Lars Vogt, Philip Strömert, Nicolas Matentzoglu, Naouel Karam, Marcel Konrad, Manuel Prinz, Roman Baum
FAIR 2.0: Extending the FAIR Guiding Principles to Address Semantic Interoperability. CoRR (2024)
J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, Hyeongsik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. Bioinform. 40 (3) (2024)
Nicolas Matentzoglu, Ian Braun, Anita R. Caron, Damien Goutte-Gattat, Benjamin M. Gyori, Nomi L. Harris, Emily Hartley, Harshad B. Hegde, Sven Hertling, Charles Tapley Hoyt, Hyeongsik Kim, Huanyu Li, James A. McLaughlin, Cássia Trojahn, Nicole A. Vasilevsky, Christopher J. Mungall
A simple standard for ontological mappings 2023: updates on data model, collaborations and tooling. OM@ISWC (2023)
Déborah Caucheteur, Zoë May Pendlington, Paola Roncaglia, Julien Gobeill, Luc Mottin, Nicolas Matentzoglu, Donat Agosti, David Osumi-Sutherland, Helen E. Parkinson, Patrick Ruch
COVoc and COVTriage: novel resources to support literature triage. Bioinform. 39 (1) (2023)
J. Harry Caufield, Tim E. Putman, Kevin Schaper, Deepak R. Unni, Harshad Hegde, Tiffany J. Callahan, Luca Cappelletti, Sierra A. T. Moxon, Vida Ravanmehr, Seth Carbon, Lauren E. Chan, Katherina Cortes, Kent A. Shefchek, Glass Elsarboukh, James P. Balhoff, Tommaso Fontana, Nicolas Matentzoglu, Richard M. Bruskiewich, Anne E. Thessen, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall, Justin T. Reese
KG-Hub - Building and Exchanging Biological Knowledge Graphs. CoRR (2023)
Nicolas Matentzoglu, J. Harry Caufield, Harshad B. Hegde, Justin T. Reese, Sierra A. T. Moxon, Hyeongsik Kim, Nomi L. Harris, Melissa A. Haendel, Christopher J. Mungall
MapperGPT: Large Language Models for Linking and Mapping Entities. CoRR (2023)
Lauren E. Chan, Anne E. Thessen, William D. Duncan, Nicolas Matentzoglu, Charles Schmitt, Cynthia J. Grondin, Nicole Vasilevsky, Julie A. McMurry, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. J. Biomed. Semant. 14 (1) (2023)
J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, HyeongSik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning. CoRR (2023)
Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Melissa A. Haendel, Asiyah Y. Lin, Blake Martin, Nicolas Matentzoglu, Daniella Meeker, Justin Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingman A. Zhang, Peter N. Robinson, Patrick Ryan, George Hripcsak, Tellen D. Bennett, Lawrence E. Hunter, Michael G. Kahn
Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality. CoRR (2022)
Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. CoRR (2022)
Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022 (2022) (2022)
Nicolas Matentzoglu, Joe E. Flack, John Graybeal, Nomi L. Harris, Harshad B. Hegde, Charles Tapley Hoyt, Hyeongsik Kim, Sabrina Toro, Nicole A. Vasilevsky, Christopher J. Mungall
A simple standard for ontological mappings 2022: updates of data model and outlook. OM@ISWC (2022)
Malcolm E. Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu, Troy J. Pells, David Osumi-Sutherland, Praneet Chaturvedi, Christina James-Zorn, Nivitha Sundararaj, Vaneet S. Lotay, Virgilio Ponferrada, Dong Zhuo Wang, Eugene Kim, Sergei Agalakov, Bradley I. Arshinoff, Kamran Karimi, Peter D. Vize, Aaron M. Zorn
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. BMC Bioinform. 23 (1) (2022)
Cássia Trojahn, Nicolas Matentzoglu
What should be the minimum requirements for making FAIR ontology alignments? OM@ISWC (2022)
Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022 (2022) (2022)
Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR (2021)
Nicole A. Vasilevsky, Sabrina Toro, Nicolas Matentzoglu, Dazhi Jiao, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall
Reclassification of Infectious Disease in the Mondo Disease Ontology. ICBO (2021)
Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021)
Sebastian Köhler, Michael A. Gargano, Nicolas Matentzoglu, Leigh Carmody, David Lewis-Smith, Nicole A. Vasilevsky, Daniel Danis, Ganna Balagura, Gareth Baynam, Amy M. Brower, Tiffany J. Callahan, Christopher G. Chute, Johanna L. Est, Peter D. Galer, Shiva Ganesan, Matthias Griese, Matthias Haimel, Julia Pazmandi, Marc Hanauer, Nomi L. Harris, Michael Hartnett, Maximilian Hastreiter, Fabian Hauck, Yongqun He, Tim Jeske, Hugh Kearney, Gerhard Kindle, Christoph Klein, Katrin Knoflach, Roland Krause, David Lagorce, Julie A. McMurry, Jillian A. Miller, Monica C. Munoz-Torres, Rebecca L. Peters, Christina K. Rapp, Ana Rath, Shahmir A. Rind, Avi Z. Rosenberg, Michael M. Segal, Markus G. Seidel, Damian Smedley, Tomer Talmy, Yarlalu Thomas, Samuel A. Wiafe, Julie Xian, Zafer Yüksel, Ingo Helbig, Christopher J. Mungall, Melissa A. Haendel, Peter N. Robinson
The Human Phenotype Ontology in 2021. Nucleic Acids Res. 49 (Database-Issue) (2021)
Lauren E. Chan, Nicole A. Vasilevsky, Anne E. Thessen, Nicolas Matentzoglu, William D. Duncan, Christopher J. Mungall, Melissa A. Haendel
A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes. ICBO (2021)
Justin T. Reese, Deepak R. Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent A. Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response. Patterns 2 (1) (2021)
Ghader Kurdi, Jared Leo, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler, Sophie Forge, Gina Donato, Will Dowling
A comparative study of methods for a priori prediction of MCQ difficulty. Semantic Web 12 (3) (2021)
Kent A. Shefchek, Nomi L. Harris, Michael A. Gargano, Nicolas Matentzoglu, Deepak R. Unni, Matthew H. Brush, Dan Keith, Tom Conlin, Nicole A. Vasilevsky, Xingmin Aaron Zhang, James P. Balhoff, Larry Babb, Susan M. Bello, Hannah Blau, Yvonne M. Bradford, Seth Carbon, Leigh Carmody, Lauren E. Chan, Valentina Cipriani, Alayne Cuzick, Maria G. Della Rocca, Nathan A. Dunn, Shahim Essaid, Petra Fey, Christian A. Grove, Jean-Philippe F. Gourdine, Ada Hamosh, Midori A. Harris, Ingo Helbig, Maureen E. Hoatlin, Marcin P. Joachimiak, Simon Jupp, Kenneth B. Lett, Suzanna E. Lewis, Craig McNamara, Zoë May Pendlington, Clare Pilgrim, Tim E. Putman, Vida Ravanmehr, Justin T. Reese, Erin Rooney Riggs, Sofia M. C. Robb, Paola Roncaglia, James Seager, Erik Segerdell, Morgan Similuk, Andrea L. Storm, Courtney Thaxon, Anne E. Thessen, Julius O. B. Jacobsen, Julie A. McMurry, Tudor Groza, Sebastian Köhler, Damian Smedley, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel, Monica C. Munoz-Torres, David Osumi-Sutherland
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 48 (Database-Issue) (2020)
Nicole A. Vasilevsky, Shahim Essaid, Nicolas Matentzoglu, Nomi L. Harris, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall
Mondo Disease Ontology: Harmonizing Disease Concepts Across the World (short paper). ICBO/ODLS (2020)
Jared Leo, Nicolas Matentzoglu, Uli Sattler, Bijan Parsia
A systematic survey of temporal requirements of bio-health ontologies. Semantic Web 11 (4) (2020)
Jean-Philippe F. Gourdine, Matthew H. Brush, Nicole A. Vasilevsky, Kent A. Shefchek, Sebastian Köhler, Nicolas Matentzoglu, Monica C. Munoz-Torres, Julie A. McMurry, Xingmin Aaron Zhang, Peter N. Robinson, Melissa A. Haendel
Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery. Database J. Biol. Databases Curation 2019 (2019)
Sebastian Köhler, Leigh Carmody, Nicole A. Vasilevsky, Julius O. B. Jacobsen, Daniel Danis, Jean-Philippe F. Gourdine, Michael A. Gargano, Nomi L. Harris, Nicolas Matentzoglu, Julie A. McMurry, David Osumi-Sutherland, Valentina Cipriani, James P. Balhoff, Tom Conlin, Hannah Blau, Gareth Baynam, Richard Palmer, Dylan Gratian, Hugh J. S. Dawkins, Michael Segal, Anna C. Jansen, Ahmed Muaz, Willie H. Chang, Jenna Bergerson, Stanley J. F. Laulederkind, Zafer Yüksel, Sergi Beltran, Alexandra F. Freeman, Panagiotis I. Sergouniotis, Daniel Durkin, Andrea L. Storm, Marc Hanauer, Michael Brudno, Susan M. Bello, Murat Sincan, Kayli Rageth, Matthew T. Wheeler, Renske Oegema, Halima Lourghi, Maria G. Della Rocca, Rachel Thompson, Francisco Castellanos, James Priest, Charlotte Cunningham-Rundles, Ayushi Hegde, Ruth C. Lovering, Catherine Hajek, Annie Olry, Luigi Notarangelo, Morgan Similuk, Xingmin Aaron Zhang, David Gómez-Andrés, Hanns Lochmüller, Hélène Dollfus, Sergio Rosenzweig, Shruti Marwaha, Ana Rath, Kathleen Sullivan, Cynthia L. Smith, Joshua D. Milner, Dorothée Leroux, Cornelius F. Boerkoel, Amy Klion, Melody C. Carter, Tudor Groza, Damian Smedley, Melissa A. Haendel, Chris Mungall, Peter N. Robinson
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. Nucleic Acids Res. 47 (Database-Issue) (2019)
Henriette Harmse, Mélanie Courtot, Warren Read, Nicolas Matentzoglu, David Osumi-Sutherland, Simon Jupp
Where Does an Ontology Start? ICBO (2019)
Robert Stevens, Phillip Lord, James Malone, Nicolas Matentzoglu
Measuring expert performance at manually classifying domain entities under upper ontology classes. J. Web Semant. 57 (2019)
Markel Vigo, Nicolas Matentzoglu, Caroline Jay, Robert Stevens
Comparing ontology authoring workflows with Protégé: In the laboratory, in the tutorial and in the 'wild'. J. Web Semant. 57 (2019)
Jared Leo, Ghader Kurdi, Nicolas Matentzoglu, Bijan Parsia, Ulrike Sattler, Sophie Forge, Gina Donato, Will Dowling
Ontology-Based Generation of Medical, Multi-term MCQs. Int. J. Artif. Intell. Educ. 29 (2) (2019)
Leigh C. Carmody, Xingmin Aaron Zhang, Nicole A. Vasilevsky, Christopher J. Mungall, Nicolas Matentzoglu, Peter N. Robinson
Medical Action Ontology (MAxO). ICBO (2019)
Nicolas Matentzoglu, Bijan Parsia, Uli Sattler
OWL Reasoning: Subsumption Test Hardness and Modularity. J. Autom. Reason. 60 (4) (2018)
Robert Stevens, Phillip Lord, James Malone, Nicolas Matentzoglu
Measuring Expert Performance at Manually Classifying Domain Entities under Upper Ontology Classes. CoRR (2018)
Nicolas Matentzoglu, James Malone, Chris Mungall, Robert Stevens
MIRO: guidelines for minimum information for the reporting of an ontology. J. Biomed. Semant. 9 (1) (2018)
Nicolas Matentzoglu, David Osumi-Sutherland
Reconciling Ontology Definitions using the Ontology Pattern Reconciliation Workbench and the DOSDP Framework. ICBO (2018)
Nicolas Matentzoglu, Markel Vigo, Caroline Jay, Robert Stevens
Inference Inspector: Improving the verification of ontology authoring actions. J. Web Semant. 49 (2018)
Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller
The OWL Reasoner Evaluation (ORE) 2015 Competition Report. J. Autom. Reason. 59 (4) (2017)
Jeff Z. Pan, Nicolas Matentzoglu, Caroline Jay, Markel Vigo, Yuting Zhao
Understanding Author Intentions: Test Driven Knowledge Graph Construction. Reasoning Web (2016)
Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller
The OWL Reasoner Evaluation (ORE) 2015 Resources. ISWC (2) (2016)
Nicolas Matentzoglu, Markel Vigo, Caroline Jay, Robert Stevens
Making Entailment Set Changes Explicit Improves the Understanding of Consequences of Ontology Authoring Actions. EKAW (2016)
Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller
The OWL Reasoner Evaluation (ORE) 2015 Competition Report. SSWS@ISWC (2015)
Michael Lee, Nicolas Matentzoglu, Uli Sattler, Bijan Parsia
Verifying Reasoner Correctness - A Justication Based Method. ORE (2015)
Nicolas Matentzoglu, Jared Leo, Valentino Hudhra, Uli Sattler, Bijan Parsia
A Survey of Current, Stand-alone OWL Reasoners. ORE (2015)
Nicolas Matentzoglu, Uli Sattler, Bijan Parsia
Empirical Investigation of Subsumption Test Hardness in Description Logic Classification. Description Logics (2015)
Michael Lee, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler
A Multi-reasoner, Justification-Based Approach to Reasoner Correctness. ISWC (2) (2015)
Robert Stevens, Nicolas Matentzoglu, Uli Sattler, Margaret Stevens
A Family History Knowledge Base in OWL 2. ORE (2014)
Nicolas Matentzoglu, Bijan Parsia, Uli Sattler
An Empirical Investigation of Difficulty of Subsets of Description Logic Ontologies. Description Logics (2014)
Nicolas Matentzoglu, Bijan Parsia
OWL/ZIP: Distributing Large and Modular Ontologies. OWLED (2014)
Nicolas Matentzoglu, Daniel Tang, Bijan Parsia, Uli Sattler
The Manchester OWL Repository: System Description. ISWC (Posters & Demos) (2014)
Mercedes Argüello Casteleiro, Nicolas Matentzoglu, Bijan Parsia, Sebastian Brandt
Computable Declarative Representation of Clinical Assessment Scales in EHRs. CBMS (2014)
Nicolas Matentzoglu, Bijan Parsia
The OWL Full/DL Gap in the Field. OWLED (2014)
Rafael S. Gonçalves, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler
The Empirical Robustness of Description Logic Classification. Description Logics (2013)
Nicolas Matentzoglu, Samantha Bail, Bijan Parsia
A Corpus of OWL DL Ontologies. Description Logics (2013)
Rafael S. Gonçalves, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler
The Empirical Robustness of Description Logic Classification. ISWC (Posters & Demos) (2013)
Mercedes Argüello Casteleiro, Nicolas Matentzoglu, Bijan Parsia, Sebastian Brandt
Computable Declarative Representation of Clinical Assessment Scales in EHRs. SWAT4LS (2013)
Rafael S. Gonçalves, Samantha Bail, Ernesto Jiménez-Ruiz, Nicolas Matentzoglu, Bijan Parsia, Birte Glimm, Yevgeny Kazakov
OWL Reasoner Evaluation (ORE) Workshop 2013 Results: Short Report. ORE (2013)
Nicolas Matentzoglu, Samantha Bail, Bijan Parsia
A Snapshot of the OWL Web. ISWC (1) (2013)

Nicolas Matentzoglu.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Nicolas Matentzoglu