Kamran Karimi

Publication Activity (10 Years)

Years Active: 1997-2022
Publications (10 Years): 9

Top Topics

Genotype Phenotype

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

Publications

Bradley I. Arshinoff, Gregory A. Cary, Kamran Karimi, Saoirse Foley, Sergei Agalakov, Francisco Delgado, Vaneet S. Lotay, Carolyn Ku, Troy J. Pells, Thomas R. Beatman, Eugene Kim, R. Andrew Cameron, Peter D. Vize, Cheryl A. Telmer, Jenifer C. Croce, Charles A. Ettensohn, Veronica F. Hinman
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. Nucleic Acids Res. 50 (D1) (2022)
Malcolm E. Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu, Troy J. Pells, David Osumi-Sutherland, Praneet Chaturvedi, Christina James-Zorn, Nivitha Sundararaj, Vaneet S. Lotay, Virgilio Ponferrada, Dong Zhuo Wang, Eugene Kim, Sergei Agalakov, Bradley I. Arshinoff, Kamran Karimi, Peter D. Vize, Aaron M. Zorn
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. BMC Bioinform. 23 (1) (2022)
Kamran Karimi, Sergei Agalakov, Cheryl A. Telmer, Thomas R. Beatman, Troy J. Pells, Bradley I. M. Arshinoff, Carolyn Ku, Saoirse Foley, Veronica F. Hinman, Charles A. Ettensohn, Peter D. Vize
Classifying domain-specific text documents containing ambiguous keywords. Database J. Biol. Databases Curation 2021 (2021)
Saoirse Foley, Carolyn Ku, Brad Arshinoff, Vaneet Lotay, Kamran Karimi, Peter D. Vize, Veronica F. Hinman
Integration of 1: 1 orthology maps and updated datasets into Echinobase. Database J. Biol. Databases Curation 2021 (2021)
Joshua Fortriede, Troy J. Pells, Stanley Chu, Praneet Chaturvedi, Dong Zhou Wang, Malcolm E. Fisher, Christina James-Zorn, Ying Wang, Mardi Nenni, Kevin A. Burns, Vaneet Lotay, Virgilio G. Ponferrada, Kamran Karimi, Aaron M. Zorn, Peter D. Vize
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. Nucleic Acids Res. 48 (Database-Issue) (2020)
Troy J. Pells, Malcolm E. Fisher, Erik Segerdell, Joshua Fortriede, Kevin A. Burns, Stanley Chu, Praneet Chaturvedi, Christina James-Zorn, Vaneet Lotay, Mardi Nenni, Virgilio G. Ponferrada, Dong Zhou Wang, Ying Wang, Kamran Karimi, Peter D. Vize, Aaron M. Zorn
Visualization of Gene Expression and Expression as a Phenotype with the XPO, XAO and DO using a Combination of Experimental Data Sources. ICBO (2018)
Kamran Karimi, Joshua Fortriede, Vaneet Lotay, Kevin A. Burns, Dong Zhou Wang, Malcolm E. Fisher, Troy J. Pells, Christina James-Zorn, Ying Wang, Virgilio G. Ponferrada, Stanley Chu, Praneet Chaturvedi, Aaron M. Zorn, Peter D. Vize
Xenbase: a genomic, epigenomic and transcriptomic model organism database. Nucleic Acids Res. 46 (Database-Issue) (2018)
Kamran Karimi
The Feasibility of Using OpenCL Instead of OpenMP for Parallel CPU Programming. CoRR (2015)
J. Brad Karpinka, Joshua Fortriede, Kevin A. Burns, Christina James-Zorn, Virgilio G. Ponferrada, Jacqueline Lee, Kamran Karimi, Aaron M. Zorn, Peter D. Vize
model organism database; new virtualized system, data types and genomes. Nucleic Acids Res. 43 (Database-Issue) (2015)
Kamran Karimi, Peter D. Vize
The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud. Database J. Biol. Databases Curation 2014 (2014)
Kamran Karimi, Aleks G. Pamir, M. Haris Afzal
Accelerating a Cloud-Based Software GNSS Receiver. Int. J. Grid High Perform. Comput. 6 (3) (2014)
Kamran Karimi, Aleks G. Pamir, M. Haris Afzal
Accelerating a Cloud-Based Software GNSS Receiver. CoRR (2013)
Kamran Karimi
Challenges of Upgrading a Virtual Appliance CoRR (2012)
Kamran Karimi, Neil G. Dickson, Firas Hamze, Mohammad H. S. Amin, Marshall Drew-Brook, Fabián A. Chudak, Paul I. Bunyk, William G. Macready, Geordie Rose
Investigating the performance of an adiabatic quantum optimization processor. Quantum Inf. Process. 11 (1) (2012)
Neil G. Dickson, Kamran Karimi, Firas Hamze
Importance of explicit vectorization for CPU and GPU software performance. J. Comput. Phys. 230 (13) (2011)
Kamran Karimi, Neil G. Dickson, Firas Hamze
High-performance Physics Simulations Using Multi-core CPUs and GPGPUs in a Volunteer Computing Context. Int. J. High Perform. Comput. Appl. 25 (1) (2011)
Geordie Rose, Kamran Karimi, Neil G. Dickson, Firas Hamze, Mohammad H. S. Amin, Marshall Drew-Brook, Fabián A. Chudak, Paul I. Bunyk, William G. Macready
Investigating the Performance of an Adiabatic Quantum Optimization Processor CoRR (2010)
Kamran Karimi, Neil G. Dickson, Firas Hamze
High-Performance Physics Simulations Using Multi-Core CPUs and GPGPUs in a Volunteer Computing Context CoRR (2010)
Kamran Karimi
A Brief Introduction to Temporality and Causality CoRR (2010)
Kamran Karimi, Howard J. Hamilton
Generation and Interpretation of Temporal Decision Rules CoRR (2010)
Kamran Karimi, Neil G. Dickson, Firas Hamze
A Performance Comparison of CUDA and OpenCL CoRR (2010)
Neil G. Dickson, Kamran Karimi, Firas Hamze
Importance of Explicit Vectorization for CPU and GPU Software Performance CoRR (2010)
Xing Li, Howard J. Hamilton, Kamran Karimi, Liqiang Geng
The Multi-Tree Cubing algorithm for computing iceberg cubes. J. Intell. Inf. Syst. 33 (2) (2009)
Kamran Karimi, Howard J. Hamilton
Using Dependence Diagrams to Summarize Decision Rule Sets. Canadian Conference on AI (2008)
Mahdi Shafieezadeh, Seyed Mohmmad Javad Jalali, Kamran Karimi, Nafiseh Payani
Risk Assessment Approach to Knowledge Management based on SECI Model. IKE (2008)
Navid Nezafati, Seyed Mohmmad Javad Jalali, Mahdi Shafieezadeh, Kamran Karimi
A developed methodology for human driven knowledge acquisition. ITI (2008)
Kamran Karimi, Mohsen Sharifi
Transparent Distributed Programming under Linux. HPCS (2006)
Howard J. Hamilton, Kamran Karimi
The TIMERS II Algorithm for the Discovery of Causality. PAKDD (2005)
Kamran Karimi
Back to the Future: Changing the Direction of Time to Discover Causality. Canadian Conference on AI (2003)
Kamran Karimi, Howard J. Hamilton
Discovering Temporal/Causal Rules: A Comparison of Methods. Canadian Conference on AI (2003)
Kamran Karimi, Howard J. Hamilton
Distinguishing Causal and Acausal Temporal Relations. PAKDD (2003)
Kamran Karimi, Howard J. Hamilton
RFCT: An Association-Based Causality Miner. Canadian Conference on AI (2002)
Kamran Karimi, Howard J. Hamilton
Discovering Temporal Rules from Temporally Ordered Data. IDEAL (2002)
Kamran Karimi, Howard J. Hamilton
TimeSleuth: A Tool for Discovering Causal and Temporal Rules. ICTAI (2002)
Kamran Karimi
The Iterative Multi-agent Method for Solving Complex Search Problems. Canadian Conference on AI (2000)
Kamran Karimi, Howard J. Hamilton
Logical Decision Rules: Teaching C4.5 to Speak Prolog. IDEAL (2000)
Kamran Karimi, Julia Ann Johnson, Howard J. Hamilton
A Proposal for Including Behavior in the Process of Object Similarity Assessment with Examples from Artificial Life. Rough Sets and Current Trends in Computing (2000)
Kamran Karimi, Howard J. Hamilton
Finding Temporal Relations: Causal Bayesian Networks vs. C4.5. ISMIS (2000)
Kamran Karimi, Mohsen Sharifi
DIPC: A System Software Solution for Distributed Programming. PDPTA (1997)