Virgilio G. Ponferrada

Publication Activity (10 Years)

Years Active: 2013-2020
Publications (10 Years): 3

Top Topics

Differentially Expressed Genes

Gene Expression

Top Venues

Nucleic Acids Res.

J. Biomed. Semant.

Database J. Biol. Databases Curation

Publications

Joshua Fortriede, Troy J. Pells, Stanley Chu, Praneet Chaturvedi, Dong Zhou Wang, Malcolm E. Fisher, Christina James-Zorn, Ying Wang, Mardi Nenni, Kevin A. Burns, Vaneet Lotay, Virgilio G. Ponferrada, Kamran Karimi, Aaron M. Zorn, Peter D. Vize
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. Nucleic Acids Res. 48 (Database-Issue) (2020)
Troy J. Pells, Malcolm E. Fisher, Erik Segerdell, Joshua Fortriede, Kevin A. Burns, Stanley Chu, Praneet Chaturvedi, Christina James-Zorn, Vaneet Lotay, Mardi Nenni, Virgilio G. Ponferrada, Dong Zhou Wang, Ying Wang, Kamran Karimi, Peter D. Vize, Aaron M. Zorn
Visualization of Gene Expression and Expression as a Phenotype with the XPO, XAO and DO using a Combination of Experimental Data Sources. ICBO (2018)
Kamran Karimi, Joshua Fortriede, Vaneet Lotay, Kevin A. Burns, Dong Zhou Wang, Malcolm E. Fisher, Troy J. Pells, Christina James-Zorn, Ying Wang, Virgilio G. Ponferrada, Stanley Chu, Praneet Chaturvedi, Aaron M. Zorn, Peter D. Vize
Xenbase: a genomic, epigenomic and transcriptomic model organism database. Nucleic Acids Res. 46 (Database-Issue) (2018)
J. Brad Karpinka, Joshua Fortriede, Kevin A. Burns, Christina James-Zorn, Virgilio G. Ponferrada, Jacqueline Lee, Kamran Karimi, Aaron M. Zorn, Peter D. Vize
model organism database; new virtualized system, data types and genomes. Nucleic Acids Res. 43 (Database-Issue) (2015)
Jeff B. Bowes, Kevin A. Snyder, Christina James-Zorn, Virgilio G. Ponferrada, Chris Jarabek, Kevin A. Burns, Bishnu Bhattacharyya, Aaron M. Zorn, Peter D. Vize
The Xenbase literature curation process. Database J. Biol. Databases Curation 2013 (2013)
Erik Segerdell, Virgilio G. Ponferrada, Christina James-Zorn, Kevin A. Burns, Joshua Fortriede, Wasila M. Dahdul, Peter D. Vize, Aaron M. Zorn
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. J. Biomed. Semant. 4 (2013)
Christina James-Zorn, Virgilio G. Ponferrada, Chris Jarabek, Kevin A. Burns, Erik Segerdell, Jacqueline Lee, Kevin A. Snyder, Bishnu Bhattacharyya, J. Brad Karpinka, Joshua Fortriede, Jeff B. Bowes, Aaron M. Zorn, Peter D. Vize
model organism database. Nucleic Acids Res. 41 (Database-Issue) (2013)