Wasila M. Dahdul

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 8

Top Topics

Natural Language Processing Systems

Top Venues

J. Biomed. Semant.

Database J. Biol. Databases Curation

Publications

Kazi Sajeed Mehrab, M. Maruf, Arka Daw, Harish Babu Manogaran, Abhilash Neog, Mridul Khurana, Bahadir Altintas, Yasin Bakis, Elizabeth G. Campolongo, Matthew J. Thompson, Xiaojun Wang, Hilmar Lapp, Wei-Lun Chao, Paula M. Mabee, Henry L. Bart Jr., Wasila M. Dahdul, Anuj Karpatne
Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images. CoRR (2024)
Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks. KDD (2023)
Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks. CoRR (2023)
Samuel Stevens, Jiaman Wu, Matthew J. Thompson, Elizabeth G. Campolongo, Chan Hee Song, David Edward Carlyn, Li Dong, Wasila M. Dahdul, Charles V. Stewart, Tanya Y. Berger-Wolf, Wei-Lun Chao, Yu Su
BIOCLIP: A Vision Foundation Model for the Tree of Life. CoRR (2023)
Jeremy Leipzig, Yasin Bakis, Xiaojun Wang, Mohannad Elhamod, Kelly Diamond, Wasila M. Dahdul, Anuj Karpatne, A. Murat Maga, Paula M. Mabee, Henry L. Bart Jr., Jane Greenberg
Biodiversity Image Quality Metadata Augments Convolutional Neural Network Classification of Fish Species. MTSR (2020)
Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation 2018 (2018)
Paula M. Mabee, James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Christopher J. Mungall, Todd J. Vision
Reasoning over Anatomical Homology in the Phenoscape KB. ICBO (2018)
Alexander D. Diehl, Terrence F. Meehan, Yvonne M. Bradford, Matthew H. Brush, Wasila M. Dahdul, David S. Dougall, Yongqun He, David Osumi-Sutherland, Alan Ruttenberg, Sirarat Sarntivijai, Ceri E. Van Slyke, Nicole A. Vasilevsky, Melissa A. Haendel, Judith A. Blake, Christopher J. Mungall
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. J. Biomed. Semant. 7 (2016)
Hong Cui, Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Paula M. Mabee, James P. Balhoff, Hariharan Gopalakrishnan
CharaParser+EQ: Performance evaluation without gold standard. ASIST (2015)
Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Paula M. Mabee
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. Database J. Biol. Databases Curation 2015 (2015)
James P. Balhoff, Wasila M. Dahdul, Thomas Dececchi, Hilmar Lapp, Paula M. Mabee, Todd J. Vision
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. J. Biomed. Semant. 5 (2014)
Wasila M. Dahdul, Hong Cui, Paula M. Mabee, Christopher J. Mungall, David Osumi-Sutherland, Ramona L. Walls, Melissa A. Haendel
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. J. Biomed. Semant. 5 (2014)
Melissa A. Haendel, James P. Balhoff, Frederic B. Bastian, David C. Blackburn, Judith A. Blake, Yvonne M. Bradford, Aurélie Comte, Wasila M. Dahdul, Thomas Dececchi, Robert E. Druzinsky, Terry F. Hayamizu, Nizar Ibrahim, Suzanna E. Lewis, Paula M. Mabee, Anne Niknejad, Marc Robinson-Rechavi, Paul C. Sereno, Christopher J. Mungall
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. J. Biomed. Semant. 5 (2014)
Peter E. Midford, Thomas Dececchi, James P. Balhoff, Wasila M. Dahdul, Nizar Ibrahim, Hilmar Lapp, John G. Lundberg, Paula M. Mabee, Paul C. Sereno, Monte Westerfield, Todd J. Vision, David C. Blackburn
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. J. Biomed. Semant. 4 (2013)
Erik Segerdell, Virgilio G. Ponferrada, Christina James-Zorn, Kevin A. Burns, Joshua Fortriede, Wasila M. Dahdul, Peter D. Vize, Aaron M. Zorn
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. J. Biomed. Semant. 4 (2013)
Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database J. Biol. Databases Curation 2013 (2013)
James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
Employing Reasoning within the Phenoscape Knowledgebase. ICBO (2011)
Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes. ICBO (2011)