Kalpana Raja

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 11

Top Topics

Biomedical Literature

Concept Based Information Retrieval

Top Venues

J. Biomed. Informatics

Publications

Yan Hu, Vipina Kuttichi Keloth, Kalpana Raja, Yong Chen, Hua Xu
Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach. Bioinform. 39 (9) (2023)
Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu
Representing and utilizing clinical textual data for real world studies: An OHDSI approach. J. Biomed. Informatics 142 (2023)
Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations. CoRR (2023)
Robert J. Millikin, Kalpana Raja, John W. Steill, Cannon Lock, Xuancheng Tu, Ian Ross, Lam C. Tsoi, Finn Kuusisto, Zijian Ni, Miron Livny, Brian Bockelman, James A. Thomson, Ron M. Stewart
Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models. BMC Bioinform. 24 (1) (2023)
Matthew T. Patrick, Redina Bardhi, Kalpana Raja, Kevin He, Lam C. Tsoi
Advancement in predicting interactions between drugs used to treat psoriasis and its comorbidities by integrating molecular and clinical resources. J. Am. Medical Informatics Assoc. 28 (6) (2021)
Archana Prabahar, Subashini Swaminathan, Kalpana Raja, Srividhya Vellingiri, Ramalingam Jegadeesan, Bharathi Nathan
Discovery of novel inhibitors targeting movement protein for controlling the transmission of banana bunchy top virus infection in plantain by structure-based virtual screening. Int. J. Bioinform. Res. Appl. 14 (4) (2018)
Kalpana Raja, Jeyakumar Natarajan
Mining protein phosphorylation information from biomedical literature using NLP parsing and Support Vector Machines. Comput. Methods Programs Biomed. 160 (2018)
Kalpana Raja, Naman Dasot, Pawan Goyal, Siddhartha R. Jonnalagadda
Towards Evidence-Based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns. CRI (2016)
Mohammad Amin Morid, Marcelo Fiszman, Kalpana Raja, Siddhartha Jonnalagadda, Guilherme Del Fiol
Classification of clinically useful sentences in clinical evidence resources. J. Biomed. Informatics 60 (2016)
Ravi Prakash Garg, Kalpana Raja, Siddhartha R. Jonnalagadda
CRTS: A type system for representing clinical recommendations. CoRR (2016)
Kalpana Raja, Andrew J. Sauer, Ravi Prakash Garg, Melanie R. Klerer, Siddhartha R. Jonnalagadda
A Hybrid Citation Retrieval Algorithm for Evidence-based Clinical Knowledge Summarization: Combining Concept Extraction, Vector Similarity and Query Expansion for High Precision. CoRR (2016)
Kalpana Raja, Andrew J. Sauer, Melanie R. Klerer, Siddhartha R. Jonnalagadda
Automated Citation Retrieval System for Clinical Knowledge Management. AMIA (2015)
James Cormack, Chinmoy Nath, David Milward, Kalpana Raja, Siddhartha R. Jonnalagadda
Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge. J. Biomed. Informatics 58 (2015)
Mohammad Amin Morid, Siddhartha R. Jonnalagadda, Marcelo Fiszman, Kalpana Raja, Guilherme Del Fiol
Classification of Clinically Useful Sentences in MEDLINE. AMIA (2015)
Jakob Stöber, Bret S. E. Heale, Kelley Fulghum, Guilherme Del Fiol, Heejun Kim, Kalpana Raja, Siddhartha Jonnalagadda
Concept based Information Retrieval for Clinical Case Summaries. TREC (2015)
Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan
A hybrid named entity tagger for tagging human proteins/genes. Int. J. Data Min. Bioinform. 10 (3) (2014)
Suresh Subramani, Kalpana Raja, Jeyakumar Natarajan
ProNormz - An integrated approach for human proteins and protein kinases normalization. J. Biomed. Informatics 47 (2014)
Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan
PPInterFinder - a mining tool for extracting causal relations on human proteins from literature. Database J. Biol. Databases Curation 2013 (2013)
Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database J. Biol. Databases Curation 2013 (2013)