Jianlin Shi

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 19

Top Topics

Natural Language Processing

Clinical Decision Making

Automatic Identification

Top Venues

J. Biomed. Informatics

Artif. Intell. Medicine

Publications

Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu
Representing and utilizing clinical textual data for real world studies: An OHDSI approach. J. Biomed. Informatics 142 (2023)
Qiwei Gan, Mengke Hu, Kelly S. Peterson, Hannah Eyre, Patrick R. Alba, Annie E. Bowles, Johnathan C. Stanley, Scott L. DuVall, Jianlin Shi
A deep learning approach for medication disposition and corresponding attributes extraction. J. Biomed. Informatics 143 (2023)
Richard L. Bradshaw, Kensaku Kawamoto, Kimberly A. Kaphingst, Wendy Kohlmann, Rachel Hess, Michael C. Flynn, Claude J. Nanjo, Phillip B. Warner, Jianlin Shi, Keaton L. Morgan, Kadyn Kimball, Pallavi Ranade-Kharkar, Ophira Ginsburg, Melody Goodman, Rachelle Chambers, Devin M. Mann, Scott P. Narus, Javier Gonzalez, Shane Loomis, Priscilla Chan, Rachel Monahan, Emerson P. Borsato, David E. Shields, Douglas K. Martin, Cecilia M. Kessler, Guilherme Del Fiol
GARDE: a standards-based clinical decision support platform for identifying population health management cohorts. J. Am. Medical Informatics Assoc. 29 (5) (2022)
Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. AMIA (2021)
Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. CoRR (2021)
Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall
Removing barriers to clinical text processing with MedSpaCy. AMIA (2020)
Jianlin Shi, Kevin Graves, John F. Hurdle
A generic rule-based system for clinical trial patient selection. CoRR (2019)
Brian T. Bucher, Jianlin Shi, Robert J. Pettit, Jeffrey P. Ferraro, Wendy W. Chapman, Adi V. Gundlapalli
Determination of Marital Status of Patients from Structured and Unstructured Electronic Healthcare Data. AMIA (2019)
Jianlin Shi, John F. Hurdle
FastContext: an efficient and scalable implementation of the ConText algorithm. CoRR (2019)
Jianlin Shi, Kensaku Kawamoto, Wendy Kohlmann, Danielle L. Mowery, Richard L. Bradshaw, Subhadeep Deep, Wendy W. Chapman, Guilherme Del Fiol
Extracting Disease Onset from Family History Comments in the Electronic Health Record using Fast Healthcare Interoperability Resources. AMIA (2019)
Jianlin Shi, Siru Liu, Liese C. Pruitt, Carolyn Luppens, Jeffrey P. Ferraro, Adi V. Gundlapalli, Wendy W. Chapman, Brian T. Bucher
Using Natural Language Processing to improve EHR Structured Data-based Surgical Site Infection Surveillance. AMIA (2019)
Jiantao Bian, Samir E. AbdelRahman, Jianlin Shi, Guilherme Del Fiol
Automatic identification of recent high impact clinical articles in PubMed to support clinical decision making using time-agnostic features. J. Biomed. Informatics 89 (2019)
Jianlin Shi, John F. Hurdle
, making the ConText algorithm more efficient and scalable. J. Biomed. Informatics 85 (2018)
Jianlin Shi, Danielle L. Mowery, Mingyuan Zhang, Jessica Sanders, Wendy W. Chapman, Lori Gawron
Extracting Intrauterine Device Usage from Clinical Texts Using Natural Language Processing. ICHI (2017)
Jianlin Shi, Danielle L. Mowery, Kristina M. Doing-Harris, John F. Hurdle
RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA (2016)
Jianlin Shi, Lance Pflieger
PrecMed: A collaborative environment for precision medicine research and practice. AMIA (2016)
Liqin Wang, Bruce E. Bray, Jianlin Shi, Guilherme Del Fiol, Peter J. Haug
A method for the development of disease-specific reference standards vocabularies from textual biomedical literature resources. Artif. Intell. Medicine 68 (2016)
Kristina Doing-Harris, Charlene R. Weir, Sean Igo, Jianlin Shi, YiJun Shao, John F. Hurdle
POETenceph - Automatic identification of clinical notes indicating encephalopathy using a realist ontology. AMIA (2015)
Kristina Doing-Harris, Sean Igo, Jianlin Shi, John F. Hurdle
UtahPOET: Disorder Mention Identification and Context Slot Filling with Cognitive Inspiration. SemEval@NAACL-HLT (2015)
Jon-David Ethington, Jianlin Shi, Scott D. Nelson
Online Patient Center: Expanding Patient Portals by Integrating Patient-Generated Data Directly into a Primary Care Provider's EHR Workflow. AMIA (2014)