Patrick R. Alba

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 20

Top Topics

Annotated Corpus

Text Processing

Top Venues

J. Biomed. Informatics

Medication and Adverse Drug Event Detection

Publications

Cynthia Hau, Patricia A. Woods, Amanda S. Guski, Srihari I. Raju, Liang Zhu, Patrick R. Alba, William C. Cushman, Peter A. Glassman, Areef Ishani, Addison A. Taylor, Ryan E. Ferguson, Sarah Leatherman
Strategies for secondary use of real-world clinical and administrative data for outcome ascertainment in pragmatic clinical trials. J. Biomed. Informatics 150 (2024)
Annie E. Bowles, Cris Perez, Anil Vachani, Jennifer Steltz, Brent Rose, Alex K. Bryant, Hannah Eyre, Scott L. DuVall, Julie A. Lynch, Patrick R. Alba
An NLP Framework for the Extraction of Concept Measurements from Radiology and Pathology Notes. MedInfo (2023)
Qiwei Gan, Mengke Hu, Kelly S. Peterson, Hannah Eyre, Patrick R. Alba, Annie E. Bowles, Johnathan C. Stanley, Scott L. DuVall, Jianlin Shi
A deep learning approach for medication disposition and corresponding attributes extraction. J. Biomed. Informatics 143 (2023)
Patrick R. Alba, Qiwei Gan, Mengke Hu, Shu-Hong Zhu, Scott E. Sherman, Scott L. DuVall, Mike Conway
Development of a Natural Language Processing System to Identify Clinical Documentation of Electronic Cigarette Use. MedInfo (2023)
Scott L. DuVall, Craig G. Parker, Amanda R. Shields, Patrick R. Alba, Julie A. Lynch, Michael E. Matheny, Aaron W. C. Kamauu
Toward Real-World Reproducibility: Verifying Value Sets for Clinical Research. MedInfo (2023)
Mike Conway, Patrick R. Alba, Shu-Hong Zhu, Olga V. Patterson
Vaping at the VA: Developing an Annotated Corpus of Electronic Cigarette Mentions in Clinical Notes at the Department of Veterans Affairs. AMIA (2021)
Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. AMIA (2021)
Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. CoRR (2021)
Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall
Removing barriers to clinical text processing with MedSpaCy. AMIA (2020)
Patrick R. Alba, Olga V. Patterson, Mike Conway
A Decade of Vaping: Identifying Shifts in Clinical Documentation and Terminology in the Department of Veterans Affairs (2010-2020). AMIA (2020)
Kristine E. Lynch, Patrick R. Alba, Benjamin Viernes, Scott L. DuVall
Using Enriched Samples for Semi-Automated Vocabulary Expansion to Identify Rare Events in Clinical Text: Sexual Orientation as a Use Case. MedInfo (2019)
Patrick R. Alba, Olga V. Patterson, Joshua S. Richman, Scott L. DuVall
Automatic Methods to Extract Prescription Status Quality Measures from Unstructured Health Records. MedInfo (2019)
Alec B. Chapman, Kelly S. Peterson, Patrick R. Alba, Scott L. DuVall, Olga V. Patterson
Hybrid system for adverse drug event detection. Medication and Adverse Drug Event Detection (2018)
Alec B. Chapman, Patrick R. Alba, Brian T. Bucher, Scott L. DuVall, Olga V. Patterson
A User-Friendly Interface for Concept Dictionary Expansion Using Word Embeddings and SNOMED-CT. AMIA (2018)
Patrick R. Alba, Scott L. DuVall, Daniel Norvell, Kathryn P. Moore, Joseph M. Czerniecki, Olga V. Patterson
Ankle Brachial Index Extraction System. AMIA (2018)
Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall, Olga V. Patterson
Fast and Accurate Adverse Drug Event labeling without a GPU. AMIA (2018)
Patrick R. Alba, Scott L. DuVall, Terri Elizabeth Workman, Florian Schroeck, Olga V. Patterson
Pathology Information Extraction in Bladder Cancer Surveillance. AMIA (2017)
Olga V. Patterson, Patrick R. Alba, Scott L. DuVall
An Introduction to Natural Language Processing Methods in Clinical Research. AMIA (2016)
Scott L. DuVall, Patrick R. Alba, Olga V. Patterson
Large Scale Clinical Text Processing and Process Optimization. AMIA (2016)
Patrick R. Alba, Olga V. Patterson, Benjamin Viernes, Daniel W. Denhalter, Nicole Bailey, Andrew Wilson, Aaron W. C. Kamauu, Scott L. DuVall
The Super Annotator: A Method of Semi-Automated Rare Event Identification for Large Clinical Data Sets. AMIA (2016)
Olga V. Patterson, Makoto Jones, Yiwen Yao, Benjamin Viernes, Patrick R. Alba, Theodore J. Iwashyna, Scott L. DuVall
Extraction of Vital Signs from Clinical Notes. MedInfo (2015)
Patrick R. Alba, Scott L. DuVall, Joanne LaFleur, Adam Bress, Olga V. Patterson
Knowledge Base Acquisition For Rare Concepts Using Manual Bootstrapping. AMIA (2015)