Hong Cui

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 20

Top Topics

Natural Language Processing Systems

Multimodal Fusion

Usability Studies

Top Venues

Database J. Biol. Databases Curation

J. Biomed. Semant.

Publications

Dehui Kong, Hongyue Wang, Sijie Zhou, Hong Cui, Zhiquan Feng
PenLab: Towards Understanding of Active Collaboration for Solid Geometry Teaching. CHI Extended Abstracts (2024)
Hong Cui, Noah Giebink, Julian R. Starr, Dylan Longert, Bruce Ford, Étienne Léveillé-Bourret
From Noisy Data to Useful Color Palettes: One Step in Making Biodiversity Data FAIR. iConference (1) (2023)
Hong Cui, Zhiquan Feng, Jinglan Tian, Dehui Kong, Zishuo Xia, Weina Li
MAG: a smart gloves system based on multimodal fusion perception. CCF Trans. Pervasive Comput. Interact. 5 (4) (2023)
Hong Cui, Bruce Ford, Julian R. Starr, Anton Reznicek, Limin Zhang, James A. Macklin
Authors' attitude toward adopting a new workflow to improve the computability of phenotype publications. Database J. Biol. Databases Curation 2022 (2022) (2022)
Sebastian Deimen, Hong Cui, Michelle Higgins
A Peek into the US Informal STEM Landscape through Theconnectory.org. ASIST (2021)
Limin Zhang, Xingyi Yang, Zuleima Cota, Hong Cui, Bruce Ford, Hsin-liang Chen, James A. Macklin, Anton Reznicek, Julian R. Starr
Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study. Database J. Biol. Databases Curation 2021 (2021)
Xiangfeng Jin, Haiqing Zhou, Jianfang Song, Hong Cui, Yiren Luo, Haiping Jiang
P3H4 Overexpression Serves as a Prognostic Factor in Lung Adenocarcinoma. Comput. Math. Methods Medicine 2021 (2021)
Stephen M. Richard, David Vieglais, Hong Cui, Neil Davies, John Deck, Quan Gan, Eric C. Kansa, Sarah Whitcher Kansa, John A. Kunze, Danny Mandel, Christopher Meyer, Thomas Orrell, Sarah Ramdeen, Rebecca Snyder, Ramona L. Walls, Yuxuan Zhou, Kerstin A. Lehnert
Internet of Samples. ASIST (2021)
Limin Zhang, Hong Cui, Bruce Ford, Hsin-liang Cheng, James A. Macklin, Anton Reznicek, Julian R. Starr
Enabling Authors to Produce Computable Phenotype Measurements: Usability Studies on the Measurement Recorder. HCI (48) (2020)
Fei Yu, Laura Ruel, Ryan Tyler, Qian Xu, Hong Cui, Stan Karanasios, Ba Xuan Nguyen, Anna Keilbach, Javed Mostafa
Innovative UX Methods for Information Access Based on Interdisciplinary Approaches: Practical Lessons from Academia and Industry. Data Inf. Manag. 4 (1) (2020)
Limin Zhang, Zuleima Cota, Hong Cui, Hsin-liang Chen, Bruce Ford, Joel Sach, Jocelyn E. Pender, James A. Macklin, Anton Reznicek, Julian R. Starr
Developing community phenotype ontologies: Understanding users' preferences. ASIST (2019)
Yanjun Zhang, Robert E. Mercer, Jacquelyn A. Burkell, Hong Cui
Using Shallow Semantic Analysis to Implement Automated Quality Assessment of Web Health Care Information. CICLing (2) (2018)
Vikas Yadav, Farig Sadeque, P. Bryan Heidorn, Hong Cui
Where Are iSchools Heading? iConference (2018)
Jin Mao, Hong Cui
Identifying bacterial biotope entities using sequence labeling: Performance and feature analysis. J. Assoc. Inf. Sci. Technol. 69 (9) (2018)
Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation 2018 (2018)
Lorena Endara, J. Gordon Burleigh, Laurel Cooper, Pankaj Jaiswal, Marie-Angélique Laporte, Hong Cui
A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants. ICBO (2018)
Jin Mao, Lisa R. Moore, Carrine E. Blank, Elvis Hsin-Hui Wu, Marcia Ackerman, Sonali Ranade, Hong Cui
Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources. BMC Bioinform. 17 (2016)
Carrine E. Blank, Hong Cui, Lisa R. Moore, Ramona L. Walls
MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions. J. Biomed. Semant. 7 (2016)
Dang Tuan Nhon, Hong Cui, Angus G. Forbes
MultiLayerMatrix: Visualizing Large Taxonomic Datasets. EuroVA@EuroVis (2016)
Hong Cui, Dongfang Xu, Steven S. Chong, Martin Ramirez, Thomas Rodenhausen, James A. Macklin, Bertram Ludäscher, Robert A. Morris, Eduardo M. Soto, Nicolás Mongiardino Koch
Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building. BMC Bioinform. 17 (2016)
Fengqiong Huang, James A. Macklin, Hong Cui, Heather A. Cole, Lorena Endara
OTO: Ontology Term Organizer. BMC Bioinform. 16 (2015)
Hong Cui, Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Paula M. Mabee, James P. Balhoff, Hariharan Gopalakrishnan
CharaParser+EQ: Performance evaluation without gold standard. ASIST (2015)
Wasila M. Dahdul, Hong Cui, Paula M. Mabee, Christopher J. Mungall, David Osumi-Sutherland, Ramona L. Walls, Melissa A. Haendel
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. J. Biomed. Semant. 5 (2014)
Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database J. Biol. Databases Curation 2013 (2013)
Fengqiong Huang, James A. Macklin, Paul J. Morris, Partha Pratim Sanyal, Robert A. Morris, Hong Cui
OTO: Ontology term organizer. ASIST (2012)
Anne E. Thessen, Hong Cui, Dmitry Mozzherin
Applications of Natural Language Processing in Biodiversity Science. Adv. Bioinformatics 2012 (2012)
Ramona L. Walls, Hong Cui, James A. Macklin, Chris Mungall, Laurel Cooper, Dennis W. Stevenson, Pankaj Jaiswal
Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources. ICBO (2012)
Hong Cui
CharaParser for fine-grained semantic annotation of organism morphological descriptions. J. Assoc. Inf. Sci. Technol. 63 (4) (2012)
Alyssa Janning, Hong Cui
Evaluating the botanical coverage of PATO using an unsupervised learning algorithm. iConference (2012)
Hong Cui, Sriramu Singaram, Alyssa Janning
Combine unsupervised learning and heuristic rules to annotate organism morphological descriptions. ASIST (2011)
Hong Cui
Semantic annotation of morphological descriptions: an overall strategy. BMC Bioinform. 11 (2010)
Hong Cui
Competency evaluation of plant character ontologies against domain literature. J. Assoc. Inf. Sci. Technol. 61 (6) (2010)
Hong Cui
Unsupervised extraction of text segments from heterogeneous document collections. ASIST (2010)
Hong Cui, David Boufford, Paul Selden
Semantic annotation of biosystematics literature without training examples. J. Assoc. Inf. Sci. Technol. 61 (3) (2010)
Hong Cui, Kenneth (Yang) Jiang, Partha Pratim Sanyal
From text to RDF triple store: An application for biodiversity literature. ASIST (2010)
Hong Cui, Partha Pratim Sanyal, Chunshui Yu
Tools for Semantic Annotation of Taxonomic Descriptions. KES (4) (2010)
Hong Cui, Chunshui Yu, James A. Macklin
Application of semantic annotation for quality insurance in biosystematics publishing. ASIST (2009)
Yisong Chen, Hong Cui
Intelligent feature extraction and knowledge mining by multivariate analyses. CIDM (2009)
Hong Cui
An Application for Semantic Markup of Biodiversity Documents. Bull. IEEE Tech. Comm. Digit. Libr. 5 (1) (2009)
Hong Cui
An application for semantic markup of biodiversity documents. JCDL (2008)
Hong Cui
Unsupervised semantic markup of literature for biodiversity digital libraries. JCDL (2008)
Hong Cui, P. Bryan Heidorn
The reusability of induced knowledge for the automatic semantic markup of taxonomic descriptions. J. Assoc. Inf. Sci. Technol. 58 (1) (2007)
Hong Cui, Richard M. McCourt, Monique Feist
Unsupervised Structure Discovery for Biodiversity Information. Bull. IEEE Tech. Comm. Digit. Libr. 3 (2) (2007)
Hong Cui, Richard M. McCourt, Monique Feist
Unsupervised structure discovery for biodiversity information. JCDL (2006)
Hong Cui, Richard M. McCourt, Monique Feist
Automated concept discovery in corpora of morphological descriptions. ASIST (2006)
Hong Cui
MARTT: Using induced knowledge base to automatically mark up plant taxonomic descriptions with XML. ASIST (2005)
Haidar Moukdad, Hong Cui
How Do Search Engines Handle Chinese Queries? Webology 2 (3) (2005)
Hong Cui, P. Bryan Heidorn, Hong Zhang
An approach to automatic classification of text for information retrieval. JCDL (2002)