J. Gordon Burleigh

Publication Activity (10 Years)

Years Active: 2007-2018
Publications (10 Years): 3

Top Topics

Gene Duplication

Stability Analysis

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Lorena Endara, J. Gordon Burleigh, Laurel Cooper, Pankaj Jaiswal, Marie-Angélique Laporte, Hong Cui
A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants. ICBO (2018)
Ruchi Chaudhary, David Fernández-Baca, J. Gordon Burleigh
Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis. CoRR (2015)
Ruchi Chaudhary, David Fernández-Baca, J. Gordon Burleigh
Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis. AlCoB (2015)
Ryan Cobb, Rasha Elhesha, J. Gordon Burleigh, Tamer Kahveci
Extracting phylogenetic signals from multi-labeled gene trees and its significance for species tree construction. BCB (2014)
Saad I. Sheikh, Tamer Kahveci, Sanjay Ranka, J. Gordon Burleigh
Stability analysis of phylogenetic trees. Bioinform. 29 (2) (2013)
André Wehe, J. Gordon Burleigh, Oliver Eulenstein
Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (6) (2013)
Ruchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein
Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence. BMC Bioinform. 13 (S-10) (2012)
Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein
Consensus properties for the deep coalescence problem and their application for scalable tree search. BMC Bioinform. 13 (S-10) (2012)
Avinash Ramu, Tamer Kahveci, J. Gordon Burleigh
A scalable method for identifying frequent subtrees in sets of large phylogenetic trees. BMC Bioinform. 13 (2012)
Ruchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca
Inferring Species Trees from Incongruent Multi-Copy Gene Trees Using the Robinson-Foulds Distance CoRR (2012)
Ruchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca
Fast Local Search for Unrooted Robinson-Foulds Supertrees. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (4) (2012)
André Wehe, J. Gordon Burleigh, Oliver Eulenstein
Algorithms for Knowledge-Enhanced Supertrees. ISBRA (2012)
Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein
GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches. ISBRA (2012)
Ruchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein
Algorithms for Rapid Error Correction for the Gene Duplication Problem. ISBRA (2011)
Wen-Chieh Chang, J. Gordon Burleigh, David Fernández-Baca, Oliver Eulenstein
An ILP solution for the gene duplication problem. BMC Bioinform. 12 (S-1) (2011)
Ruchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca
Fast Local Search for Unrooted Robinson-Foulds Supertrees. ISBRA (2011)
Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein
The Deep Coalescence Consensus Tree Problem is Pareto on Clusters. ISBRA (2011)
Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein
Maximum likelihood models and algorithms for gene tree evolution with duplications and losses. BMC Bioinform. 12 (S-1) (2011)
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models. BMC Bioinform. 11 (S-1) (2010)
J. Gordon Burleigh, Mukul S. Bansal, Oliver Eulenstein, Todd J. Vision
Inferring species trees from gene duplication episodes. BCB (2010)
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, David Fernández-Baca
Robinson-Foulds Supertrees. Algorithms Mol. Biol. 5 (2010)
Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein
Triplet supertree heuristics for the tree of life. BMC Bioinform. 10 (S-1) (2009)
J. Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein
Locating Multiple Gene Duplications through Reconciled Trees. RECOMB (2008)
André Wehe, Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein
DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony. Bioinform. 24 (13) (2008)
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, André Wehe
) Speed-Up for the Local Search. RECOMB (2007)