Peter E. Midford

Publication Activity (10 Years)

Years Active: 2004-2021
Publications (10 Years): 5

Top Topics

Biological Systems

Induction Algorithms

Systems Biology

Escherichia Coli

Top Venues

Briefings Bioinform.

Nucleic Acids Res.

Publications

Peter D. Karp, Peter E. Midford, Richard Billington, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Wai Kit Ong, Pallavi Subhraveti, Ron Caspi, Carol A. Fulcher, Ingrid M. Keseler, Suzanne M. Paley
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology. Briefings Bioinform. 22 (1) (2021)
Wai Kit Ong, Peter E. Midford, Peter D. Karp
Taxonomic weighting improves the accuracy of a gap-filling algorithm for metabolic models. Bioinform. 36 (6) (2020)
Ron Caspi, Richard Billington, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Peter E. Midford, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes - a 2019 update. Nucleic Acids Res. 48 (Database-Issue) (2020)
Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti
The BioCyc collection of microbial genomes and metabolic pathways. Briefings Bioinform. 20 (4) (2019)
Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes. Nucleic Acids Res. 46 (Database-Issue) (2018)
Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena F. Deus, Brian Sidlauskas, Christian M. Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger A. Vos, Campbell O. Webb, Luke J. Harmon, Megan Pirrung, Brian C. O'Meara, Matthew W. Pennell, Siavash Mirarab, Michael S. Rosenberg, James P. Balhoff, Holly M. Bik, Tracy A. Heath, Peter E. Midford, Joseph W. Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E. Alfaro, Aaron Steele, Greg Jordan
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC Bioinform. 14 (2013)
Peter E. Midford, Thomas Dececchi, James P. Balhoff, Wasila M. Dahdul, Nizar Ibrahim, Hilmar Lapp, John G. Lundberg, Paula M. Mabee, Paul C. Sereno, Monte Westerfield, Todd J. Vision, David C. Blackburn
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. J. Biomed. Semant. 4 (2013)
James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
Employing Reasoning within the Phenoscape Knowledgebase. ICBO (2011)
Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes. ICBO (2011)
James P. Balhoff, Peter E. Midford, Hilmar Lapp
Integrating Anatomy and Phenotype Ontologies with Taxonomic Hierarchies. ICBO (2011)
Peter E. Midford
Ontologies for Behavior. Bioinform. 20 (18) (2004)