Mario Latendresse

Publication Activity (10 Years)

Years Active: 1992-2023
Publications (10 Years): 9

Top Topics

Metabolic Pathways

Biological Systems

Systems Biology

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Mario Latendresse, Jeremiah P. Malerich, James Herson, Markus Krummenacker, Judy Szeto, Vi-Anh Vu, Nathan Collins, Peter B. Madrid
SynRoute: A Retrosynthetic Planning Software. J. Chem. Inf. Model. 63 (17) (2023)
Peter D. Karp, Peter E. Midford, Richard Billington, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Wai Kit Ong, Pallavi Subhraveti, Ron Caspi, Carol A. Fulcher, Ingrid M. Keseler, Suzanne M. Paley
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology. Briefings Bioinform. 22 (1) (2021)
Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti
The BioCyc collection of microbial genomes and metabolic pathways. Briefings Bioinform. 20 (4) (2019)
Peter D. Karp, Daniel S. Weaver, Mario Latendresse
How accurate is automated gap filling of metabolic models? BMC Syst. Biol. 12 (1) (2018)
Mario Latendresse, Peter D. Karp
Evaluation of reaction gap-filling accuracy by randomization. BMC Bioinform. 19 (1) (2018)
Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes. Nucleic Acids Res. 46 (Database-Issue) (2018)
Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol A. Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Martín Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel S. Weaver, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Nucleic Acids Res. 45 (Database-Issue) (2017)
Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 44 (Database-Issue) (2016)
Peter D. Karp, Mario Latendresse, Suzanne M. Paley, Markus Krummenacker, Quang Ong, Richard Billington, Anamika Kothari, Daniel S. Weaver, Thomas J. Lee, Pallavi Subhraveti, Aaron Spaulding, Carol A. Fulcher, Ingrid M. Keseler, Ron Caspi
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology. Briefings Bioinform. 17 (5) (2016)
Mario Latendresse, Markus Krummenacker, Peter D. Karp
Optimal metabolic route search based on atom mappings. Bioinform. 30 (14) (2014)
Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, Aya Kubo, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res. 42 (Database-Issue) (2014)
Mario Latendresse
Efficiently Gap-Filling Reaction Networks. BMC Bioinform. 15 (2014)
Martin Beaudry, Danny Dubé, Maxime Dubé, Mario Latendresse, Pascal Tesson
Conservative groupoids recognize only regular languages. Inf. Comput. 239 (2014)
Ingrid M. Keseler, Amanda Mackie, Martín Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro, César Bonavides-Martínez, Carol A. Fulcher, Araceli M. Huerta, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Imke Schröder, Alexander Glennon Shearer, Pallavi Subhraveti, Michael Travers, Deepika Weerasinghe, Verena Weiss, Julio Collado-Vides, Robert P. Gunsalus, Ian T. Paulsen, Peter D. Karp
EcoCyc: fusing model organism databases with systems biology. Nucleic Acids Res. 41 (Database-Issue) (2013)
Mario Latendresse, Markus Krummenacker, Miles Trupp, Peter D. Karp
Construction and completion of flux balance models from pathway databases. Bioinform. 28 (3) (2012)
Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 40 (Database-Issue) (2012)
Suzanne M. Paley, Mario Latendresse, Peter D. Karp
Regulatory network operations in the Pathway Tools software. BMC Bioinform. 13 (2012)
Danny Dubé, Mario Latendresse, Pascal Tesson
Conservative Groupoids Recognize Only Regular Languages. LATA (2012)
Mario Latendresse, Jeremiah P. Malerich, Mike Travers, Peter D. Karp
Accurate Atom-Mapping Computation for Biochemical Reactions. J. Chem. Inf. Model. 52 (11) (2012)
Mario Latendresse, Peter D. Karp
Web-Based Metabolic Network Visualization with a Zooming User Interface. BMC Bioinform. 12 (2011)
Peter D. Karp, Mario Latendresse, Suzanne M. Paley
Using cellular network diagrams to interpret large-scale datasets: past progress and future challenges. Human Vision and Electronic Imaging (2011)
Ingrid M. Keseler, Julio Collado-Vides, Alberto Santos-Zavaleta, Martín Peralta-Gil, Socorro Gama-Castro, Luis Muñiz-Rascado, César Bonavides-Martínez, Suzanne M. Paley, Markus Krummenacker, Tomer Altman, Pallavi Kaipa, Aaron Spaulding, John Pacheco, Mario Latendresse, Carol A. Fulcher, Malabika Sarker, Alexander Glennon Shearer, Amanda Mackie, Ian T. Paulsen, Robert P. Gunsalus, Peter D. Karp
biology. Nucleic Acids Res. 39 (Database-Issue) (2011)
Mario Latendresse, Peter D. Karp
An advanced web query interface for biological databases. Database J. Biol. Databases Curation 2010 (2010)
Ron Caspi, Tomer Altman, Joseph M. Dale, Kate Dreher, Carol A. Fulcher, Fred Gilham, Pallavi Kaipa, Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne M. Paley, Liviu Popescu, Anuradha Pujar, Alexander Glennon Shearer, Peifen Zhang, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 38 (Database-Issue) (2010)
Peter D. Karp, Suzanne M. Paley, Markus Krummenacker, Mario Latendresse, Joseph M. Dale, Thomas J. Lee, Pallavi Kaipa, Fred Gilham, Aaron Spaulding, Liviu Popescu, Tomer Altman, Ian T. Paulsen, Ingrid M. Keseler, Ron Caspi
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. Briefings Bioinform. 11 (1) (2010)
Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Pallavi Kaipa, Markus Krummenacker, Mario Latendresse, Suzanne M. Paley, Seung Yon Rhee, Alexander Glennon Shearer, Christophe Tissier, Thomas C. Walk, Peifen Zhang, Peter D. Karp
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res. 36 (Database-Issue) (2008)
Mario Latendresse
Simple and efficient compilation of list comprehension in common Lisp. ILC (2007)
Mario Latendresse, Marc Feeley
Generation of fast interpreters for Huffman compressed bytecode. Sci. Comput. Program. 57 (3) (2005)
Mario Latendresse
Masquerade Detection via Customized Grammars. DIMVA (2005)
Mario Latendresse
Rewrite Systems for Symbolic Evaluation of C-like Preprocessing. CSMR (2004)
Mario Latendresse
RegReg: a Lightweight Generator of Robust Parsers for Irregular Languages. WCRE (2003)
Mario Latendresse
Fast Symbolic Evaluation of C/C++ Preprocessing Using Conditional Value. CSMR (2003)
Mario Latendresse, Marc Feeley
Generation of fast interpreters for Huffman compressed bytecode. IVME (2003)
Robert Bruce Findler, Mario Latendresse, Matthias Felleisen
Behavioral contracts and behavioral subtyping. ESEC / SIGSOFT FSE (2001)
Guy Lapalme, Mario Latendresse
A Debugging Environment for Lazy Functional Languages. LISP Symb. Comput. 5 (3) (1992)