Lukas A. Mueller

Publication Activity (10 Years)

Years Active: 2001-2021
Publications (10 Years): 10

Top Topics

Biologically Relevant

Metabolic Networks

Top Venues

Database J. Biol. Databases Curation

Nucleic Acids Res.

Publications

Hartmut Foerster, James N. D. Battey, Nicolas Sierro, Nikolai V. Ivanov, Lukas A. Mueller
Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook. Briefings Bioinform. 22 (3) (2021)
Elizabeth Arnaud, Marie-Angélique Laporte, Soonho Kim, Céline Aubert, Sabina Leonelli, Berta Miro, Laurel Cooper, Pankaj Jaiswal, Gideon Kruseman, Rosemary Shrestha, Pier Luigi Buttigieg, Christopher J. Mungall, Julian Pietragalla, Afolabi Agbona, Jacqueline Muliro, Jeffrey Detras, Vilma Hualla, Abhishek Rathore, Roma Rani Das, Ibnou Dieng, Guillaume Bauchet, Naama Menda, Cyril Pommier, Felix Shaw, David Lyon, Leroy Mwanzia, Henry Juarez, Enrico Bonaiuti, Brian Chiputwa, Oluremi Olatunbosun, Sandrine Auzoux, Esther Dzalé Yeumo, Lukas A. Mueller, Kevin A. T. Silverstein, Alexandra Lafargue, Erick Antezana, Medha Devare, Brian King
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. Patterns 1 (7) (2020)
Peter Selby, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar E. Benites-Alfaro, Clayton L. Birkett, Viana C. Calaminos, Pierre Carceller, Guillaume Cornut, Bruno Vasques Costa, Jeremy D. Edwards, Richard Finkers, Star Yanxin Gao, Mehmood Ghaffar, Philip Glaser, Valentin Guignon, Puthick Hok, Andrzej Kilian, Patrick König, Jack Elendil B. Lagare, Matthias Lange, Marie-Angélique Laporte, Pierre Larmande, David S. LeBauer, David A Lyon, David F. Marshall, Dave Matthews, Iain Milne, Naymesh Mistry, Nicolas Morales, Lukas A. Mueller, Pascal Neveu, Evangelia Papoutsoglou, Brian Pearce, Ivan Perez-Masias, Cyril Pommier, Ricardo H. Ramirez-Gonzalez, Abhishek Rathore, Angel Manica Raquel, Sebastian Raubach, Trevor Rife, Kelly Robbins, Mathieu Rouard, Chaitanya Sarma, Uwe Scholz, Guilhem Sempéré, Paul D. Shaw, Reinhard Simon, Nahuel Soldevilla, Gordon Stephen, Qi Sun, Clarysabel Tovar, Grzegorz Uszynski, Maikel Verouden, The BrAPI consortium
BrAPI - an application programming interface for plant breeding applications. Bioinform. 35 (20) (2019)
Prashant S. Hosmani, Teresa Shippy, Sherry Miller, Joshua B. Benoit, Monica C. Munoz-Torres, Mirella Flores, Lukas A. Mueller, Helen Wiersma-Koch, Tom D'Elia, Susan J. Brown, Surya Saha
A quick guide for student-driven community genome annotation. PLoS Comput. Biol. 15 (4) (2019)
Surya Saha, Prashant S. Hosmani, Krystal Villalobos-Ayala, Sherry Miller, Teresa Shippy, Mirella Flores, Andrew Rosendale, Chris Cordola, Tracey Bell, Hannah Mann, Gabe DeAvila, Daniel DeAvila, Zachary Moore, Kyle Buller, Kathryn Ciolkevich, Samantha Nandyal, Robert Mahoney, Joshua Van Voorhis, Megan Dunlevy, David C. Farrow, David Hunter, Taylar Morgan, Kayla Shore, Victoria Guzman, Allison Izsak, Danielle E. Dixon, Andrew Cridge, Liliana Cano, Xiaolong Cao, Haobo Jiang, Nan Leng, Shannon Johnson, Brandi L. Cantarel, Stephen Richards, Adam C. English, Robert G. Shatters, Christopher P. Childers, Mei-Ju Chen, Wayne B. Hunter, Michelle Cilia, Lukas A. Mueller, Monica C. Munoz-Torres, David Nelson, Monica Poelchau, Joshua B. Benoit, Helen Wiersma-Koch, Tom D'Elia, Susan J. Brown
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. Database J. Biol. Databases Curation 2019 (2019)
Hartmut Foerster, Aureliano Bombarely, James N. D. Battey, Nicolas Sierro, Nikolai V. Ivanov, Lukas A. Mueller
SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases. Database J. Biol. Databases Curation 2018 (2018)
Surya Saha, Prashant S. Hosmani, Krystal Villalobos-Ayala, Sherry Miller, Teresa Shippy, Mirella Flores, Andrew Rosendale, Chris Cordola, Tracey Bell, Hannah Mann, Gabe DeAvila, Daniel DeAvila, Zachary Moore, Kyle Buller, Kathryn Ciolkevich, Samantha Nandyal, Robert Mahoney, Joshua Van Voorhis, Megan Dunlevy, David C. Farrow, David Hunter, Taylar Morgan, Kayla Shore, Victoria Guzman, Allison Izsak, Danielle E. Dixon, Andrew Cridge, Liliana Cano, Xiaolong Cao, Haobo Jiang, Nan Leng, Shannon Johnson, Brandi L. Cantarel, Stephen Richards, Adam C. English, Robert G. Shatters, Christopher P. Childers, Mei-Ju Chen, Wayne B. Hunter, Michelle Cilia, Lukas A. Mueller, Monica C. Munoz-Torres, David Nelson, Monica Poelchau, Joshua B. Benoit, Helen Wiersma-Koch, Tom D'Elia, Susan J. Brown
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. Database J. Biol. Databases Curation 2017 (2017)
Noé Fernández-Pozo, Yi Zheng, Stephen I. Snyder, Philippe Nicolas, Yoshihito Shinozaki, Zhangjun Fei, Carmen Catala, James J. Giovannoni, Jocelyn K. C. Rose, Lukas A. Mueller
The Tomato Expression Atlas. Bioinform. 33 (15) (2017)
Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 44 (Database-Issue) (2016)
Jeremy D. Edwards, A. M. Baldo, Lukas A. Mueller
Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees and whole-genome-based data. Database J. Biol. Databases Curation 2016 (2016)
Noé Fernández-Pozo, Naama Menda, Jeremy D. Edwards, Surya Saha, Isaak Y. Tecle, Susan R. Strickler, Aureliano Bombarely, Thomas Fisher-York, Anuradha Pujar, Hartmut Foerster, Aimin Yan, Lukas A. Mueller
The Sol Genomics Network (SGN) - from genotype to phenotype to breeding. Nucleic Acids Res. 43 (Database-Issue) (2015)
Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, Aya Kubo, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res. 42 (Database-Issue) (2014)
Sook Jung, Stephen P. Ficklin, Taein Lee, Chun-Huai Cheng, Anna Blenda, Ping Zheng, Jing Yu, Aureliano Bombarely, Ilhyung Cho, Sushan Ru, Kate Evans, Cameron Peace, Albert G. Abbott, Lukas A. Mueller, Mercy A. Olmstead, Dorrie Main
The Genome Database for Rosaceae (GDR): year 10 update. Nucleic Acids Res. 42 (Database-Issue) (2014)
Isaak Y. Tecle, Jeremy D. Edwards, Naama Menda, Chiedozie Egesi, Ismail Y. Rabbi, Peter Kulakow, Robert Kawuki, Jean-Luc Jannink, Lukas A. Mueller
solGS: a web-based tool for genomic selection. BMC Bioinform. 15 (2014)
Anuradha Pujar, Naama Menda, Aureliano Bombarely, Jeremy D. Edwards, Susan Strickler, Lukas A. Mueller
From manual curation to visualization of gene families and networks across Solanaceae plant species. Database J. Biol. Databases Curation 2013 (2013)
Elizabeth Arnaud, Laurel Cooper, Rosemary Shrestha, Naama Menda, Rex T. Nelson, Luca Matteis, Milko Skofic, Ruth Bastow, Pankaj Jaiswal, Lukas A. Mueller, Graham McLaren
Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes. KEOD (2012)
Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 40 (Database-Issue) (2012)
Aureliano Bombarely, Naama Menda, Isaak Y. Tecle, Robert M. Buels, Susan Strickler, Thomas Fischer-York, Anuradha Pujar, Jonathan Leto, Joseph Gosselin, Lukas A. Mueller
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl. Nucleic Acids Res. 39 (Database-Issue) (2011)
Sook Jung, Naama Menda, Seth Redmond, Robert M. Buels, Maren Friesen, Yuri R. Bendaña, Lacey-Anne Sanderson, Hilmar Lapp, Taein Lee, Bob MacCallum, Kirstin E. Bett, Scott Cain, Dave Clements, Lukas A. Mueller, Dorrie Main
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database J. Biol. Databases Curation 2011 (2011)
Ron Caspi, Tomer Altman, Joseph M. Dale, Kate Dreher, Carol A. Fulcher, Fred Gilham, Pallavi Kaipa, Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne M. Paley, Liviu Popescu, Anuradha Pujar, Alexander Glennon Shearer, Peifen Zhang, Peter D. Karp
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 38 (Database-Issue) (2010)
Isaak Y. Tecle, Naama Menda, Robert M. Buels, Esther van der Knaap, Lukas A. Mueller
solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database. BMC Bioinform. 11 (2010)
Lukas A. Mueller, Adri A. Mills, Beth Skwarecki, Robert M. Buels, Naama Menda, Steven D. Tanksley
The SGN comparative map viewer. Bioinform. 24 (3) (2008)
Markus Krummenacker, Suzanne M. Paley, Lukas A. Mueller, Thomas Yan, Peter D. Karp
Querying and computing with BioCyc databases. Bioinform. 21 (16) (2005)
Thomas Yan, Danny Yoo, Tanya Z. Berardini, Lukas A. Mueller, Dan C. Weems, Shuai Weng, J. Michael Cherry, Seung Yon Rhee
PatMatch: a program for finding patterns in peptide and nucleotide sequences. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Cynthia J. Krieger, Peifen Zhang, Lukas A. Mueller, Alfred Wang, Suzanne M. Paley, Martha Arnaud, John Pick, Seung Yon Rhee, Peter D. Karp
MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Res. 32 (Database-Issue) (2004)
Seung Yon Rhee, William D. Beavis, Tanya Z. Berardini, Guanghong Chen, David A. Dixon, Aisling Doyle, Margarita Garcia-Hernandez, Eva Huala, Gabriel Lander, Mary Montoya, Neil Miller, Lukas A. Mueller, Suparna Mundodi, Leonore Reiser, Julie Tacklind, Dan C. Weems, Yihe Wu, Iris Xu, Daniel Yoo, Jungwon Yoon, Peifen Zhang
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res. 31 (1) (2003)
Eva Huala, Allan Dickerman, Margarita Garcia-Hernandez, Danforth Weems, Leonore Reiser, Frank LaFond, David Hanley, Donald Kiphart, Mingzhe Zhuang, Wen Huang, Lukas A. Mueller, Debika Bhattacharyya, Devaki Bhaya, Bruno W. S. Sobral, William D. Beavis, David Meinke, Christopher D. Town, Chris Somerville, Seung Yon Rhee
The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 29 (1) (2001)