Damion M. Dooley

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 23

Top Topics

Domain Ontology

Top Venues

ICBO/BioCreative

Database J. Biol. Databases Curation

Publications

William D. Duncan, Matthew Diller, Damion M. Dooley, William R. Hogan, John Beverley
Concretizing plan specifications as realizables within the OBO foundry. J. Biomed. Semant. 15 (1) (2024)
Madeline Iseminger, Muhammad Zohaib Anwar, Rhiannon Cameron, Damion M. Dooley, Paul Gordon, Emma J. Griffiths, Anoosha Sehar, Khushi Vora, William Hsiao
Tracking the Functional Effects of SARS-CoV-2 Genomic Variants: an Ontology-Driven Approach. ICBO (2023)
Damion M. Dooley, Magalie Weber, Liliana Ibanescu
Besoins ontologiques pour la transformation des aliments. IC (2023)
Brian P. Alcock, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker, Mugdha Dave, Madeline C. McCarthy, Karyn M. Mukiri, Jalees A. Nasir, Bahar Golbon, Hamna Imtiaz, Xingjian Jiang, Komal Kaur, Megan Kwong, Zi Cheng Liang, Keyu C. Niu, Prabakar Shan, Jasmine Y. J. Yang, Kristen L. Gray, Gemma Hoad, Baofeng Jia, Timsy Bhando, Lindsey A. Carfrae, Maya A. Farha, Shawn French, Rodion Gordzevich, Kenneth Rachwalski, Megan M. Tu, Emily Bordeleau, Damion M. Dooley, Emma J. Griffiths, Haley L. Zubyk, Eric D. Brown, Finlay Maguire, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Gary H. Van Domselaar, Andrew G. McArthur
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 51 (D1) (2023)
Sabrina Toro, Anna V. Anagnostopoulos, Sue Bello, Kai Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn T. O'Neil, David Osumi-Sutherland, Aleix Puig, Justin P. Reese, Leonore Reiser, Sofia M. C. Robb, Troy Ruemping, James Seager, Eric Sid, Raymund Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). CoRR (2023)
Damion M. Dooley, Tarini Naravane
Ontological how and why: action and objective of planned processes in the food domain. Frontiers Artif. Intell. 6 (2023)
John Beverley, Sam Smith, Matthew Diller, William D. Duncan, Jie Zheng, John W. Judkins, William R. Hogan, Robin McGill, Damion M. Dooley, Yongqun He
The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards. JOWO (2023)
Yongqun He, Samuel Smith, Damion M. Dooley
Foundational Development of an Occupation Ontology. JOWO (2022)
Abderahman Rejeb, John G. Keogh, Wayne Martindale, Damion M. Dooley, Edward Smart, Steven Simske, Samuel Fosso Wamba, John G. Breslin, Kosala Yapa Bandara, Subhasis Thakur, Kelly Liu, Bridgette Crowley, Sowmya Desaraju, Angela Ospina, Horia Bradau
Charting Past, Present, and Future Research in the Semantic Web and Interoperability. Future Internet 14 (6) (2022)
Anoosha Sehar, Damion M. Dooley, Amanda Windsor, William L. Hsiao
Streamlining FoodOn Seafood Nomenclature using a Semi-automated ROBOT Template-driven Approach. JOWO (2021)
Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021)
Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.
Standardization of assay representation in the Ontology for Biomedical Investigations. Database J. Biol. Databases Curation 2021 (2021)
Damion M. Dooley, Liliana Andrés-Hernández, Georgeta Bordea, Leigh Carmody, Duccio Cavalieri, Lauren E. Chan, Pol Castellano-Escuder, Carl Lachat, Fleur Mougin, Francesco Vitali, Chen Yang, Magalie Weber, Matthew Lange
OBO Foundry Food Ontology Interconnectivity. JOWO (2021)
Brian P. Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna-Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y. Min, Anatoly Miroshnichenko, Hiu-Ki Tran, Rafik E. Werfalli, Jalees A. Nasir, Martins Oloni, David J. Speicher, Alexandra Florescu, Bhavya Singh, Mateusz Faltyn, Anastasia Hernández-Koutoucheva, Arjun N. Sharma, Emily Bordeleau, Andrew C. Pawlowski, Haley L. Zubyk, Damion M. Dooley, Emma J. Griffiths, Finlay Maguire, Geoffrey L. Winsor, Robert G. Beiko, Fiona S. L. Brinkman, William W. L. Hsiao, Gary H. Van Domselaar, Andrew G. McArthur
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Res. 48 (Database-Issue) (2020)
Damion M. Dooley, William W. L. Hsiao
3D Visualization of Application Ontology Class Hierarchies. JOWO (2019)
Dalia A. Alghamdi, Damion M. Dooley, Gurinder Gosal, Emma J. Griffiths, William W. L. Hsiao
NGBO: Introducing -omics Data into Biobanking Ontology. ICBO (2019)
Damion M. Dooley, Ivan S. Gill, Emma J. Griffiths, William L. Hsiao
An Ontology-Driven Web Platform for Publishing Data Specifications to Support Data Sharing. ICBO (2019)
Dalia A. Alghamdi, Damion M. Dooley, Emma J. Griffiths, Gurinder Pal Gosal, William W. L. Hsiao
NGBO: The Introduction of -omics Data to Biobanking Ontology. ISWC (P&D/Industry/BlueSky) (2018)
Dalia A. Alghamdi, Damion M. Dooley, Gurinder Gosal, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao
FoodOn: A Semantic Ontology Approach for Mapping Foodborne Disease Metadata. ICBO (2017)
Damion M. Dooley, Emma J. Griffiths, Gurinder Gosal, Fiona S. L. Brinkman, William W. L. Hsiao
The Genomic Epidemiology Ontology and GEEM Ontology Reusability Platform. JOWO (2017)
Emma J. Griffiths, Damion M. Dooley, Pier Luigi Buttigieg, Robert Hoehndorf, Fiona S. L. Brinkman, William W. L. Hsiao
FoodON: A Global Farm-to-Fork Food Ontology. ICBO/BioCreative (2016)
Damion M. Dooley, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao
An OBI Ontology Datum Proof Sheet. ICBO/BioCreative (2016)
Damion M. Dooley, Aaron J. Petkau, Gary H. Van Domselaar, William W. L. Hsiao
Sequence database versioning for command line and Galaxy bioinformatics servers. Bioinform. 32 (8) (2016)