Robert G. Beiko

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 7

Top Topics

Escherichia Coli

Semantic Similarity

Top Venues

Nucleic Acids Res.

Publications

Brian P. Alcock, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker, Mugdha Dave, Madeline C. McCarthy, Karyn M. Mukiri, Jalees A. Nasir, Bahar Golbon, Hamna Imtiaz, Xingjian Jiang, Komal Kaur, Megan Kwong, Zi Cheng Liang, Keyu C. Niu, Prabakar Shan, Jasmine Y. J. Yang, Kristen L. Gray, Gemma Hoad, Baofeng Jia, Timsy Bhando, Lindsey A. Carfrae, Maya A. Farha, Shawn French, Rodion Gordzevich, Kenneth Rachwalski, Megan M. Tu, Emily Bordeleau, Damion M. Dooley, Emma J. Griffiths, Haley L. Zubyk, Eric D. Brown, Finlay Maguire, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Gary H. Van Domselaar, Andrew G. McArthur
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 51 (D1) (2023)
Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Jean-Christophe Grenier, Robert G. Beiko, Julie Hussin
deepSimDEF: deep neural embeddings of gene products and gene ontology terms for functional analysis of genes. Bioinform. 38 (11) (2022)
Miria Bernardino, Robert G. Beiko
Genome-scale prediction of bacterial promoters. Biosyst. 221 (2022)
Brian P. Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna-Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y. Min, Anatoly Miroshnichenko, Hiu-Ki Tran, Rafik E. Werfalli, Jalees A. Nasir, Martins Oloni, David J. Speicher, Alexandra Florescu, Bhavya Singh, Mateusz Faltyn, Anastasia Hernández-Koutoucheva, Arjun N. Sharma, Emily Bordeleau, Andrew C. Pawlowski, Haley L. Zubyk, Damion M. Dooley, Emma J. Griffiths, Finlay Maguire, Geoffrey L. Winsor, Robert G. Beiko, Fiona S. L. Brinkman, William W. L. Hsiao, Gary H. Van Domselaar, Andrew G. McArthur
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Res. 48 (Database-Issue) (2020)
Michael A. Peabody, Wing Yin Venus Lau, Gemma Hoad, Baofeng Jia, Finlay Maguire, Kristen L. Gray, Robert G. Beiko, Fiona S. L. Brinkman
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data. Bioinform. 36 (10) (2020)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees. Algorithmica 74 (3) (2016)
Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Robert G. Beiko
simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes. Bioinform. 32 (9) (2016)
Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz, Robert G. Beiko
STAMP: statistical analysis of taxonomic and functional profiles. Bioinform. 30 (21) (2014)
Michael S. Porter, Robert G. Beiko
SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles. Bioinform. 29 (15) (2013)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees CoRR (2013)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fixed-Parameter Algorithms for Maximum Agreement Forests. SIAM J. Comput. 42 (4) (2013)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests CoRR (2011)
Donovan H. Parks, Norman J. MacDonald, Robert G. Beiko
Classifying short genomic fragments from novel lineages using composition and homology. BMC Bioinform. 12 (2011)
Norman J. MacDonald, Robert G. Beiko
Efficient learning of microbial genotype-phenotype association rules. Bioinform. 26 (15) (2010)
Donovan H. Parks, Robert G. Beiko
Identifying biologically relevant differences between metagenomic communities. Bioinform. 26 (6) (2010)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fast FPT Algorithms for Computing Rooted Agreement Forests: Theory and Experiments. SEA (2010)
Jacqueline L. Whalley, Stephen Brooks, Robert G. Beiko
Radié: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree. Bioinform. 25 (5) (2009)
Robert G. Beiko, Robert L. Charlebois
A simulation test bed for hypotheses of genome evolution. Bioinform. 23 (7) (2007)
Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan
A two-phase strategy for detecting recombination in nucleotide sequences. South Afr. Comput. J. 38 (2007)
Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan
Detecting recombination in evolving nucleotide sequences. BMC Bioinform. 7 (2006)
Robert G. Beiko, Robert L. Charlebois
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA. BMC Bioinform. 6 (2005)
Robert G. Beiko, Cheong Xin Chan, Mark A. Ragan
A word-oriented approach to alignment validation. Bioinform. 21 (10) (2005)