deepSimDEF: deep neural embeddings of gene products and gene ontology terms for functional analysis of genes.
Ahmad PesaranghaderStan MatwinMarina SokolovaJean-Christophe GrenierRobert G. BeikoJulie HussinPublished in: Bioinform. (2022)
Keyphrases
- functional analysis
- gene products
- gene ontology
- gene function
- gene ontology terms
- gene expression data
- gene expression
- microarray
- gene expression analysis
- gene networks
- microarray data
- semantic similarity
- biomedical literature
- information theoretic
- protein protein interactions
- genomic data
- gene clusters
- protein function
- low dimensional
- candidate genes
- biological networks
- high dimensional data
- interaction networks
- high throughput
- biological knowledge
- high dimensionality
- gene sets
- regulatory networks
- gene expression profiles
- wordnet
- dimensionality reduction
- gene regulatory networks