SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles.
Michael S. PorterRobert G. BeikoPublished in: Bioinform. (2013)
Keyphrases
- similarity assessment
- similarity measure
- sequence matching
- multiresolution
- geometric consistency
- similarity calculation
- sequence similarity
- similarity measurement
- finding similar
- similarity scores
- matching score
- matching algorithm
- hidden markov models
- multiscale
- optimal matching
- partial matching
- shape similarity
- matching scheme
- string similarity
- image pyramids
- coarse to fine
- image matching
- pattern matching
- longest common subsequence
- image representation
- distance measure
- similarity metric
- shape matching
- graph matching
- similarity matching
- semantic similarity
- user profiles
- temporal order
- feature vectors
- image sequences
- image segmentation