Chris Whidden

Publication Activity (10 Years)

Years Active: 2005-2019
Publications (10 Years): 12

Top Topics

Phylogenetic Trees

Distance Measurement

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

SIAM J. Discret. Math.

Publications

Chris Whidden, Frederick A. Matsen IV
Calculating the Unrooted Subtree Prune-and-Regraft Distance. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (3) (2019)
Chris Whidden, Frederick A. Matsen IV
Efficiently Inferring Pairwise Subtree Prune-and-Regraft Adjacencies between Phylogenetic Trees. ANALCO (2018)
Chris Whidden, Brian C. Claywell, Thayer Fisher, Andrew F. Magee, Mathieu Fourment, Frederick A. Matsen IV
Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies. CoRR (2018)
Chris Whidden, Frederick A. Matsen IV
Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph. Theor. Comput. Sci. 699 (2017)
Julia Matsieva, Steven Kelk, Céline Scornavacca, Chris Whidden, Dan Gusfield
A Resolution of the Static Formulation Question for the Problem of Computing the History Bound. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Chris Whidden, Frederick A. Matsen IV
Efficiently Inferring Pairwise Subtree Prune-and-Regraft Adjacencies between Phylogenetic Trees. CoRR (2016)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees. Algorithmica 74 (3) (2016)
Chris Whidden, Frederick A. Matsen IV
Chain Reduction Preserves the Unrooted Subtree Prune-and-Regraft Distance. CoRR (2016)
Chris Whidden, Frederick A. Matsen IV
Ricci-Ollivier Curvature of the Rooted Phylogenetic Subtree-Prune-Regraft Graph. ANALCO (2016)
Leo van Iersel, Steven Kelk, Nela Lekic, Chris Whidden, Norbert Zeh
Hybridization Number on Three Rooted Binary Trees is EPT. SIAM J. Discret. Math. 30 (3) (2016)
Chris Whidden, Frederick A. Matsen IV
Ricci-Ollivier Curvature of the Rooted Phylogenetic Subtree-Prune-Regraft Graph. CoRR (2015)
Chris Whidden, Frederick A. Matsen IV
Calculating the Unrooted Subtree Prune-and-Regraft Distance. CoRR (2015)
Leo van Iersel, Steven Kelk, Nela Lekic, Chris Whidden, Norbert Zeh
Hybridization Number on Three Trees. CoRR (2014)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees CoRR (2013)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fixed-Parameter Algorithms for Maximum Agreement Forests. SIAM J. Comput. 42 (4) (2013)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests CoRR (2011)
Chris Whidden, Robert G. Beiko, Norbert Zeh
Fast FPT Algorithms for Computing Rooted Agreement Forests: Theory and Experiments. SEA (2010)
Vlado Keselj, Haibin Liu, Norbert Zeh, Christian Blouin, Chris Whidden
Finding optimal parameters for edit distance based sequence classification is NP-hard. KDD Workshop on Statistical and Relational Learning in Bioinformatics (2009)
Chris Whidden, Norbert Zeh
A Unifying View on Approximation and FPT of Agreement Forests. WABI (2009)
Tony Abou-Assaleh, Nick Cercone, Jon Doyle, Vlado Keselj, Chris Whidden
DalTREC 2005 QA System Jellyfish: Mark-and-Match Approach to Question Answering. TREC (2005)