Pjotr Prins

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 10

Top Topics

Poses Challenges

Top Venues

PLoS Comput. Biol.

J. Open Source Softw.

Publications

Erik Garrison, Zev N. Kronenberg, Eric T. Dawson, Brent S. Pedersen, Pjotr Prins
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar. PLoS Comput. Biol. 18 (5) (2022)
Andrea Guarracino, Simon Heumos, Sven Nahnsen, Pjotr Prins, Erik Garrison
ODGI: understanding pangenome graphs. Bioinform. 38 (13) (2022)
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9 (2020)
Leyla J. García, Erick Antezana, Alexander García Castro, Evan Bolton, Rafael C. Jimenez, Pjotr Prins, Juan M. Banda, Toshiaki Katayama
Ten simple rules to run a successful BioHackathon. PLoS Comput. Biol. 16 (5) (2020)
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob VanderPlas
Journal of Open Source Software (JOSS): design and first-year review. PeerJ Comput. Sci. 4 (2018)
Alexander García Castro, Erick Antezana, Jael García, Olga L. Giraldo, Pjotr Prins, Rutger A. Vos
Shō-coin: A Knowledge-Based Economy for Life Sciences. SWAT4LS (2017)
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin Mattheus Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob VanderPlas
Journal of Open Source Software (JOSS): design and first-year review. CoRR (2017)
Steffen Möller, Stuart W. Prescott, Lars Wirzenius, Petter Reinholdtsen, Brad Chapman, Pjotr Prins, Stian Soiland-Reyes, Fabian Klötzl, Andrea Bagnacani, Matús Kalas, Andreas Tille, Michael R. Crusoe
Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis. Data Sci. Eng. 2 (3) (2017)
Danny Arends, Yang Li, Gudrun A. Brockmann, Ritsert C. Jansen, Robert W. Williams, Pjotr Prins
Correlation Trait Loci (CTL) mapping: phenotype network inference subject to genotype. J. Open Source Softw. 1 (6) (2016)
Zachary Sloan, Danny Arends, Karl W. Broman, Arthur Centeno, Nicholas A. Furlotte, Harm Nijveen, Lei Yan, Xiang Zhou, Robert W. Williams, Pjotr Prins
GeneNetwork: framework for web-based genetics. J. Open Source Softw. 1 (2) (2016)
Artem Tarasov, Albert J. Vilella, Edwin Cuppen, Isaac J. Nijman, Pjotr Prins
Sambamba: fast processing of NGS alignment formats. Bioinform. 31 (12) (2015)
Steffen Möller, Enis Afgan, Michael Banck, Raoul Jean Pierre Bonnal, Timothy Booth, John Chilton, Peter J. A. Cock, Markus Gumbel, Nomi L. Harris, Richard C. G. Holland, Matús Kalas, László Kaján, Eri Kibukawa, David R. Powell, Pjotr Prins, Jacqueline Quinn, Olivier Sallou, Francesco Strozzi, Torsten Seemann, Clare Sloggett, Stian Soiland-Reyes, William Spooner, Sascha Steinbiss, Andreas Tille, Anthony J. Travis, Roman Guimera, Toshiaki Katayama, Brad A. Chapman
Community-driven development for computational biology at Sprints, Hackathons and Codefests. BMC Bioinform. 15 (S-14) (2014)
Dhananjay M. Balan, Tomas Malinauskas, Pjotr Prins, Steffen Möller
High-throughput Molecular Docking Now in Reach for a Wider Biochemical Community. PDP (2012)
Danny Arends, K. Joeri van der Velde, Pjotr Prins, Karl W. Broman, Steffen Möller, Ritsert C. Jansen, Morris A. Swertz
xQTL workbench: a scalable web environment for multi-level QTL analysis. Bioinform. 28 (7) (2012)
Caroline Durrant, Morris A. Swertz, Rudi Alberts, Danny Arends, Steffen Möller, Richard Mott, Pjotr Prins, K. Joeri van der Velde, Ritsert C. Jansen, Klaus Schughart
Bioinformatics tools and database resources for systems genetics analysis in mice - a short review and an evaluation of future needs. Briefings Bioinform. 13 (2) (2012)
Raoul Jean Pierre Bonnal, Jan Aerts, George Githinji, Naohisa Goto, Daniel MacLean, Chase A. Miller, Hiroyuki Mishima, Massimiliano Pagani, Ricardo Ramirez-Gonzalez, Geert Smant, Francesco Strozzi, Rob Syme, Rutger A. Vos, Trevor J. Wennblom, Ben J. Woodcroft, Toshiaki Katayama, Pjotr Prins
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. Bioinform. 28 (7) (2012)
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1 (2010)
Danny Arends, Pjotr Prins, Ritsert C. Jansen, Karl W. Broman
R/qtl: high-throughput multiple QTL mapping. Bioinform. 26 (23) (2010)
Naohisa Goto, Pjotr Prins, Mitsuteru Nakao, Raoul Jean Pierre Bonnal, Jan Aerts, Toshiaki Katayama
BioRuby: bioinformatics software for the Ruby programming language. Bioinform. 26 (20) (2010)