Lorena A. Barba

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 40

Top Topics

Scientific Computing

Computational Science

Intracranial Aneurysms

Top Venues

Comput. Sci. Eng.

J. Open Source Softw.

Comput. Phys. Commun.

Publications

Srinath Kailasa, Tingyu Wang, Lorena A. Barba, Timo Betcke
PyExaFMM: an exercise in designing high-performance software with Python and Numba. CoRR (2023)
Pi-Yueh Chuang, Lorena A. Barba
Predictive Limitations of Physics-Informed Neural Networks in Vortex Shedding. CoRR (2023)
Srinath Kailasa, Tingyu Wang, Lorena A. Barba, Timo Betcke
PyExaFMM: An Exercise in Designing High-Performance Software With Python and Numba. Comput. Sci. Eng. 24 (5) (2022)
Tingyu Wang, Simon K. Layton, Lorena A. Barba
Inexact GMRES iterations and relaxation strategies with fast-multipole boundary element method. Adv. Comput. Math. 48 (3) (2022)
Lorena A. Barba
Defining the Role of Open Source Software in Research Reproducibility. Computer 55 (8) (2022)
Lorena A. Barba
Defining the role of open source software in research reproducibility. CoRR (2022)
Pi-Yueh Chuang, Lorena A. Barba
Experience report of physics-informed neural networks in fluid simulations: pitfalls and frustration. SciPy (2022)
Pi-Yueh Chuang, Lorena A. Barba
Experience report of physics-informed neural networks in fluid simulations: pitfalls and frustration. CoRR (2022)
Pi-Yueh Chuang, Tracy Thorleifson, Lorena A. Barba
geoclaw-landspill: an oil land-spill and overland flow simulator for pipeline rupture events. J. Open Source Softw. 6 (62) (2021)
Lorena A. Barba
The Python/Jupyter Ecosystem: Today's Problem-Solving Environment for Computational Science. Comput. Sci. Eng. 23 (3) (2021)
Tingyu Wang, Rio Yokota, Lorena A. Barba
ExaFMM: a high-performance fast multipole method library with C++ and Python interfaces. J. Open Source Softw. 6 (61) (2021)
Lorena A. Barba, Andreas Klöckner, Prabhu Ramachandran, Rollin C. Thomas
Scientific Computing With Python on High-Performance Heterogeneous Systems. Comput. Sci. Eng. 23 (4) (2021)
Mohammad Akhlaghi, Raúl Infante-Sainz, Boudewijn F. Roukema, Mohammadreza Khellat, David Valls-Gabaud, Roberto Baena Gallé, Lorena A. Barba, Sandra Gesing
Toward Long-Term and Archivable Reproducibility. Comput. Sci. Eng. 23 (3) (2021)
Olivier Mesnard, Lorena A. Barba
[Re] Three-dimensional wake topology and propulsive performance of low-aspect-ratio pitching-rolling plates. CoRR (2021)
Tingyu Wang, Christopher D. Cooper, Timo Betcke, Lorena A. Barba
High-productivity, high-performance workflow for virus-scale electrostatic simulations with Bempp-Exafmm. CoRR (2021)
Lorena A. Barba, George K. Thiruvathukal
Trustworthy Computational Evidence Through Transparency and Reproducibility. Comput. Sci. Eng. 23 (1) (2021)
Duncan A. Brown, Karan Vahi, Michela Taufer, Von Welch, Ewa Deelman, Lorena A. Barba, George K. Thiruvathukal
Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger. Comput. Sci. Eng. 23 (2) (2021)
Beth A. Plale, Tanu Malik, Line C. Pouchard, Lorena A. Barba, Sandra Gesing
Reproducibility Practice in High-Performance Computing: Community Survey Results. Comput. Sci. Eng. 23 (5) (2021)
Lorena A. Barba
12 Ways to Fool the Masses with Irreproducible Results. IPDPS (2021)
Lorena A. Barba
Computational Science and Engineering in 2020. Comput. Sci. Eng. 22 (6) (2020)
Lorena A. Barba
Engineers Code: reusable open learning modules for engineering computations. CoRR (2020)
Ana Trisovic, Chris R. Jones, Ben Couturier, Marco Clemencic, Lorena A. Barba, George K. Thiruvathukal
Provenance Tracking in the LHCb Software. Comput. Sci. Eng. 22 (2) (2020)
Lorena A. Barba
Engineers Code: Reusable Open Learning Modules for Engineering Computations. Comput. Sci. Eng. 22 (4) (2020)
Olivier Mesnard, Lorena A. Barba, George K. Thiruvathukal
Reproducible Workflow on a Public Cloud for Computational Fluid Dynamics. Comput. Sci. Eng. 22 (1) (2020)
Olivier Mesnard, Lorena A. Barba
Reproducible Workflow on a Public Cloud for Computational Fluid Dynamics. CoRR (2019)
Lorena A. Barba
Praxis of Reproducible Computational Science. Comput. Sci. Eng. 21 (1) (2019)
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob VanderPlas
Journal of Open Source Software (JOSS): design and first-year review. PeerJ Comput. Sci. 4 (2018)
Pi-Yueh Chuang, Olivier Mesnard, Anush Krishnan, Lorena A. Barba
PetIBM: toolbox and applications of the immersed-boundary method on distributed-memory architectures. J. Open Source Softw. 3 (25) (2018)
Daniel S. Katz, Gabrielle Allen, Lorena A. Barba, Devin R. Berg, Holly Bik, Carl Boettiger, Christine L. Borgman, C. Titus Brown, Stuart Buck, Randy Burd, Anita de Waard, Martin Paul Eve, Brian E. Granger, Josh Greenberg, Adina Howe, Bill Howe, May Khanna, Timothy L. Killeen, Matthew S. Mayernik, Erin C. McKiernan, Chris Mentzel, Nirav C. Merchant, Kyle E. Niemeyer, Laura Norén, Sarah M. Nusser, Daniel A. Reed, Edward Seidel, MacKenzie Smith, Jeffrey R. Spies, Matthew J. Turk, John D. Van Horn, Jay Walsh
The principles of tomorrow's university. F1000Research 7 (2018)
Lorena A. Barba
Terminologies for Reproducible Research. CoRR (2018)
Lorena A. Barba, George K. Thiruvathukal
Reproducible Research for Computing in Science & Engineering. Comput. Sci. Eng. 19 (6) (2017)
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin Mattheus Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob VanderPlas
Journal of Open Source Software (JOSS): design and first-year review. CoRR (2017)
Anush Krishnan, Olivier Mesnard, Lorena A. Barba
cuIBM: a GPU-based immersed boundary method code. J. Open Source Softw. 2 (15) (2017)
Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C. Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael Neto Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Dan McGlinn, Christoph Metzner, Owen L. Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne B. Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Joseph Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito
Sustainable computational science: the ReScience initiative. PeerJ Comput. Sci. 3 (2017)
Natalia C. Clementi, Gilbert Forsyth, Christopher D. Cooper, Lorena A. Barba
PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics. J. Open Source Softw. 2 (19) (2017)
Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C. Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael Neto Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Dan McGlinn, Christoph Metzner, Owen L. Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne B. Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Joseph Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito
Sustainable computational science: the ReScience initiative. CoRR (2017)
Pi-Yueh Chuang, Lorena A. Barba
AmgXWrapper: An interface between PETSc and the NVIDIA AmgX library. J. Open Source Softw. 2 (16) (2017)
Olivier Mesnard, Lorena A. Barba
Reproducible and Replicable Computational Fluid Dynamics: It's Harder Than You Think. Comput. Sci. Eng. 19 (4) (2017)
Christopher D. Cooper, Natalia C. Clementi, Gilbert Forsyth, Lorena A. Barba
PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics. J. Open Source Softw. 1 (4) (2016)
Christopher D. Cooper, Lorena A. Barba
Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code. Comput. Phys. Commun. 202 (2016)
Qi Hu, Nail A. Gumerov, Rio Yokota, Lorena A. Barba, Ramani Duraiswami
Scalable Fast Multipole Accelerated Vortex Methods. IPDPS Workshops (2014)
Christopher D. Cooper, Jaydeep P. Bardhan, Lorena A. Barba
A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers. Comput. Phys. Commun. 185 (3) (2014)
Doug James, Nancy Wilkins-Diehr, Victoria Stodden, Dirk Colbry, Carlos Rosales, Mark R. Fahey, Justin Shi, Rafael Ferreira da Silva, Kyo Lee, Ralph Roskies, Laurence Loewe, Susan Lindsey, Rob Kooper, Lorena A. Barba, David H. Bailey, Jonathan M. Borwein, Óscar Corcho, Ewa Deelman, Michael C. Dietze, Benjamin Gilbert, Jan Harkes, Seth Keele, Praveen Kumar, Jong Lee, Erika Linke, Richard Marciano, Luigi Marini, Chris Mattmann, Dave Mattson, Kenton McHenry, Robert T. McLay, Sheila Miguez, Barbara S. Minsker, María S. Pérez-Hernández, Dan Ryan, Mats Rynge, Idafen Santana-Pérez, Mahadev Satyanarayanan, Gloriana St. Clair, Keith Webster, Eivind Hovig, Daniel S. Katz, Sophie Kay, Geir Kjetil Sandve, David Skinner, Gabrielle Allen, John Cazes, Kym Won Cho, Jim Fonseca, Lorraine J. Hwang, Lars Koesterke, Pragnesh Patel, Line Pouchard, Edward Seidel, Isuru Suriarachchi
Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE. CoRR (2014)
Rio Yokota, Lorena A. Barba, Tetsu Narumi, Kenji Yasuoka
Petascale turbulence simulation using a highly parallel fast multipole method on GPUs. Comput. Phys. Commun. 184 (3) (2013)
Rio Yokota, Lorena A. Barba
Hierarchical N-body Simulations with Autotuning for Heterogeneous Systems. Comput. Sci. Eng. 14 (3) (2012)
Qi Hu, Nail A. Gumerov, Rio Yokota, Lorena A. Barba, Ramani Duraiswami
Poster: Scalable Fast Multipole Methods for Vortex Element Methods. SC Companion (2012)
Rio Yokota, Lorena A. Barba
A tuned and scalable fast multipole method as a preeminent algorithm for exascale systems. Int. J. High Perform. Comput. Appl. 26 (4) (2012)
Qi Hu, Nail A. Gumerov, Rio Yokota, Lorena A. Barba, Ramani Duraiswami
Abstract: Scalable Fast Multipole Methods for Vortex Element Methods. SC Companion (2012)
Rio Yokota, Lorena A. Barba
Fast N-body Simulations on GPUs CoRR (2011)
Rio Yokota, Lorena A. Barba
Fast Multipole Method vs. Spectral Method for the Simulation of Isotropic Turbulence on GPUs CoRR (2011)
Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba, Tsuyoshi Hamada
Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns. Comput. Phys. Commun. 182 (6) (2011)
Felipe A. Cruz, Simon K. Layton, Lorena A. Barba
How to obtain efficient GPU kernels: An illustration using FMM & FGT algorithms. Comput. Phys. Commun. 182 (10) (2011)
Rio Yokota, Tetsu Narumi, Lorena A. Barba, Kenji Yasuoka
Petascale turbulence simulation using a highly parallel fast multipole method CoRR (2011)
Rio Yokota, Lorena A. Barba
A Tuned and Scalable Fast Multipole Method as a Preeminent Algorithm for Exascale Systems CoRR (2011)
Simon K. Layton, Anush Krishnan, Lorena A. Barba
cuIBM -- A GPU-accelerated Immersed Boundary Method CoRR (2011)
Lorena A. Barba, Louis F. Rossi
Global field interpolation for particle methods. J. Comput. Phys. 229 (4) (2010)
Felipe A. Cruz, Simon K. Layton, Lorena A. Barba
How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms CoRR (2010)
Rio Yokota, Tsuyoshi Hamada, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba
Biomolecular Electrostatics Simulation by an FMM-based BEM on 512 GPUs CoRR (2010)
Rio Yokota, Lorena A. Barba, Matthew G. Knepley
PetRBF--A parallel O(N) algorithm for radial basis function interpolation CoRR (2009)
Claudio E. Torres, Lorena A. Barba
Fast radial basis function interpolation with Gaussians by localization and iteration. J. Comput. Phys. 228 (14) (2009)
Felipe A. Cruz, Matthew G. Knepley, Lorena A. Barba
PetFMM--A dynamically load-balancing parallel fast multipole library CoRR (2009)
Felipe A. Cruz, Lorena A. Barba
Characterization of the errors of the FMM in particle simulations CoRR (2008)