Tsuyoshi Hamada

Publication Activity (10 Years)

Years Active: 1998-2017
Publications (10 Years): 2

Top Topics

Parallel Implementation

Hyperparameters

General Purpose Computing

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Reiko Nishihara, Kimberly Glass, Kosuke Mima, Tsuyoshi Hamada, Jonathan A. Nowak, Zhi Rong Qian, Peter Kraft, Edward L. Giovannucci, Charles S. Fuchs, Andrew T. Chan, John Quackenbush, Shuji Ogino, Jukka-Pekka Onnela
Biomarker correlation network in colorectal carcinoma by tumor anatomic location. BMC Bioinform. 18 (1) (2017)
Cheng Ling, Tsuyoshi Hamada, Jing-Yang Gao, Guoguang Zhao, Donghong Sun, Weifeng Shi
++: A High Performance and Resource-Efficient GPU-Oriented Phylogenetic Analysis Method. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (5) (2016)
Shinpei Kato, Eijiro Takeuchi, Yoshio Ishiguro, Yoshiki Ninomiya, Kazuya Takeda, Tsuyoshi Hamada
An Open Approach to Autonomous Vehicles. IEEE Micro 35 (6) (2015)
Cheng Ling, Chunbao Zhou, Arong Luo, Guoguang Zhao, Tsuyoshi Hamada, Xiaoyan Zhu
Optimizing the Bayesian Inference of Phylogeny on Graphic Processors. CCGRID (2015)
Lucas Benedicic, Felipe A. Cruz, Tsuyoshi Hamada, Peter Korosec
A GRASS GIS parallel module for radio-propagation predictions. CoRR (2014)
Lucas Benedicic, Felipe A. Cruz, Tsuyoshi Hamada, Peter Korosec
A GRASS GIS parallel module for radio-propagation predictions. Int. J. Geogr. Inf. Sci. 28 (4) (2014)
Peter Berczik, Rainer Spurzem, Shiyan Zhong, Long Wang, Keigo Nitadori, Tsuyoshi Hamada, Alexander Veles
Up to 700k GPU Cores, Kepler, and the Exascale Future for Simulations of Star Clusters Around Black Holes. ISC (2013)
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
High performance phylogenetic analysis on CUDA-compatible GPUs. SIGARCH Comput. Archit. News 40 (5) (2012)
Rainer Spurzem, Peter Berczik, Ingo Berentzen, Keigo Nitadori, Tsuyoshi Hamada, Guillermo Marcus Martinez, Andreas Kugel, Reinhard Männer, J. Fiestas, Robi Banerjee, Ralf Klessen
Astrophysical particle simulations with large custom GPU clusters on three continents. Comput. Sci. Res. Dev. 26 (3-4) (2011)
Lei Liu, Guillermo Marcus Martinez, Peter Berczik, Tsuyoshi Hamada, Ingo Berentzen, Andreas Kugel, Reinhard Männer, Robi Banerjee, Ralf Klessen, Rainer Spurzem
Astrophysical SPH Simulations with raceSPH Library. CSE (2011)
Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba, Tsuyoshi Hamada
Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns. Comput. Phys. Commun. 182 (6) (2011)
Keisuke Dohi, Yuichiro Shibata, Tsuyoshi Hamada, Tomonari Masada, Kiyoshi Oguri, Duncan A. Buell
Implementation of a programming environment with a multithread model for reconfigurable systems. SIGARCH Comput. Archit. News 38 (4) (2010)
Keisuke Dohi, Khaled Benkrid, Cheng Ling, Tsuyoshi Hamada, Yuichiro Shibata
Highly efficient mapping of the Smith-Waterman algorithm on CUDA-compatible GPUs. ASAP (2010)
Tsuyoshi Hamada, Keigo Nitadori
190 TFlops Astrophysical N-body Simulation on a Cluster of GPUs. SC (2010)
Rio Yokota, Tsuyoshi Hamada, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba
Biomolecular Electrostatics Simulation by an FMM-based BEM on 512 GPUs CoRR (2010)
Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri
Accelerating Collapsed Variational Bayesian Inference for Latent Dirichlet Allocation with Nvidia CUDA Compatible Devices. IEA/AIE (2009)
Tsuyoshi Hamada, Keigo Nitadori, Khaled Benkrid, Yousuke Ohno, Gentaro Morimoto, Tomonari Masada, Yuichiro Shibata, Kiyoshi Oguri, Makoto Taiji
A novel multiple-walk parallel algorithm for the Barnes-Hut treecode on GPUs - towards cost effective, high performance N-body simulation. Comput. Sci. Res. Dev. 24 (1-2) (2009)
Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri
Bayesian Multi-topic Microarray Analysis with Hyperparameter Reestimation. ADMA (2009)
Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji
-body simulations on GPUs with applications in both astrophysics and turbulence. SC (2009)
Tomonari Masada, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri
Bag of Timestamps: A Simple and Efficient Bayesian Chronological Mining. APWeb/WAIM (2009)
Tomonari Masada, Daiji Fukagawa, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri
Dynamic hyperparameter optimization for bayesian topical trend analysis. CIKM (2009)
Kentaro Matsuo, Tsuyoshi Hamada, Masayuki Miyoshi, Yuichiro Shibata, Kiyoshi Oguri
Accelerating Phase Correlation Functions Using GPU and FPGA. AHS (2009)
Tsuyoshi Hamada, Khaled Benkrid, Keigo Nitadori, Makoto Taiji
A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation. AHS (2009)
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs. SASP (2009)
Naohito Nakasato, Tsuyoshi Hamada
Astrophysical Hydrodynamics Simulations on a Reconfigurable System. FCCM (2005)
Tsuyoshi Hamada, Naohito Nakasato
Massively Parallel Processors Generator for Reconfigurable System. FCCM (2005)
Tsuyoshi Hamada, Naohito Nakasato
PGR: A Software Package for Reconfigurable Super-Computing. FPL (2005)
Tsuyoshi Hamada, Toshiyuki Fukushige, Atsushi Kawai, Junichiro Makino
PROGRAPE-1: A Programmable Special-Purpose Computer for Many-Body Simulations. FCCM (1998)