Makoto Taiji

Publication Activity (10 Years)

Years Active: 1994-2022
Publications (10 Years): 3

Top Topics

Molecular Dynamics

Gaussian Density

Mixture Distributions

Top Venues

J. Comput. Chem.

Comput. Phys. Commun.

Publications

Keigo Nishida, Makoto Taiji
AdamB: Decoupled Bayes by Backprop With Gaussian Scale Mixture Prior. IEEE Access 10 (2022)
Gentaro Morimoto, Yohei M. Koyama, Hao Zhang, Teruhisa S. Komatsu, Yousuke Ohno, Keigo Nishida, Itta Ohmura, Hiroshi Koyama, Makoto Taiji
Hardware acceleration of tensor-structured multilevel ewald summation method on MDGRAPE-4A, a special-purpose computer system for molecular dynamics simulations. SC (2021)
Hao Zhang, Itta Ohmura, Makoto Taiji
Implementing a Comprehensive Networks-on-Chip Generator with Optimal Configurations. CLUSTER (2020)
Takao Otsuka, Noriaki Okimoto, Makoto Taiji
Assessment and acceleration of binding energy calculations for protein-ligand complexes by the fragment molecular orbital method. J. Comput. Chem. 36 (30) (2015)
Junya Yamagishi, Noriaki Okimoto, Gentaro Morimoto, Makoto Taiji
A new set of atomic radii for accurate estimation of solvation free energy by Poisson-Boltzmann solvent model. J. Comput. Chem. 35 (29) (2014)
Yousuke Ohno, Rio Yokota, Hiroshi Koyama, Gentaro Morimoto, Aki Hasegawa, Gen Masumoto, Noriaki Okimoto, Yoshinori Hirano, Huda Ibeid, Tetsu Narumi, Makoto Taiji
Petascale molecular dynamics simulation using the fast multipole method on K computer. Comput. Phys. Commun. 185 (10) (2014)
Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Francesco Zerbetto, Siegfried Höfinger
Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3. Comput. J. 54 (7) (2011)
Tsuyoshi Hamada, Keigo Nitadori, Khaled Benkrid, Yousuke Ohno, Gentaro Morimoto, Tomonari Masada, Yuichiro Shibata, Kiyoshi Oguri, Makoto Taiji
A novel multiple-walk parallel algorithm for the Barnes-Hut treecode on GPUs - towards cost effective, high performance N-body simulation. Comput. Sci. Res. Dev. 24 (1-2) (2009)
Noriaki Okimoto, Noriyuki Futatsugi, Hideyoshi Fuji, Atsushi Suenaga, Gentaro Morimoto, Ryoko Yanai, Yousuke Ohno, Tetsu Narumi, Makoto Taiji
High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations. PLoS Comput. Biol. 5 (10) (2009)
Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji
-body simulations on GPUs with applications in both astrophysics and turbulence. SC (2009)
Gota Kikugawa, Rossen Apostolov, Narutoshi Kamiya, Makoto Taiji, Ryutaro Himeno, Haruki Nakamura, Yasushige Yonezawa
Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems. J. Comput. Chem. 30 (1) (2009)
Tsuyoshi Hamada, Khaled Benkrid, Keigo Nitadori, Makoto Taiji
A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation. AHS (2009)
Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried Höfinger
Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach. J. Comput. Chem. 30 (14) (2009)
Tetsu Narumi, Shun Kameoka, Makoto Taiji, Kenji Yasuoka
Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model. SIAM J. Sci. Comput. 30 (6) (2008)
Duraid Madina, Makoto Taiji
Circuit and physical design of the MDGRAPE-4 on-chip network links. SLIP (2008)
Yousuke Ohno, Eiji Nishibori, Tetsu Narumi, Takahiro Koishi, Tahir H. Tahirov, Hideo Ago, Masashi Miyano, Ryutaro Himeno, Toshikazu Ebisuzaki, Makoto Sakata, Makoto Taiji
A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3. SC (2007)
Asaki Saito, Makoto Taiji, Takashi Ikegami
Dynamical Singularities in Online Learning of Recurrent Neural Networks. FOCI (2007)
Tetsu Narumi, Yousuke Ohno, Noriaki Okimoto, Takahiro Koishi, Atsushi Suenaga, Noriyuki Futatsugi, Ryoko Yanai, Ryutaro Himeno, Shigenori Fujikawa, Makoto Taiji, Mitsuru Ikei
Gordon Bell finalists II - A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3. SC (2006)
Toshikazu Ebisuzaki, Robert S. Germain, Makoto Taiji
PetaFLOPS computing. Commun. ACM 47 (11) (2004)
Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Akihiko Konagaya
MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. PARCO (2003)
Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Noriyuki Futatsugi, Atsushi Suenaga, Naoki Takada, Akihiko Konagaya
Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. SC (2003)
Yuzuru Sato, Makoto Taiji, Takashi Ikegami
On the Power of Nonlinear Mappings in Switching Map Systems. UMC (2000)
Takashi Ikegami, Makoto Taiji
Imitation and Cooperation in Coupled Dynamical Recognizers. ECAL (1999)
Yuto Komeiji, Masami Uebayasi, Ryo Takata, Akihiro Shimizu, Keiji Itsukashi, Makoto Taiji
Fast and accurate molecular dynamics simulation of a protein using a special-purpose computer. J. Comput. Chem. 18 (12) (1997)
Junichiro Makino, Makoto Taiji, Toshikazu Ebisuzaki, Daiichiro Sugimoto
GRAPE-4: A Special-Purpose Computer for Gravitational N-Body Problems. PPSC (1995)
Junichiro Makino, Makoto Taiji
Astrophysical N-body simulations on the GRAPE-4 Special-Purpose Computer. SC (1995)
Makoto Taiji, Junichiro Makino, Toshikazu Ebisuzaki, Daiichiro Sugimoto
GRAPE-4: A Teraflops Massively Parallel Special-Purpose Computer System for Astrophysical itN-body Simulations. IPPS (1994)
Junichiro Makino, Makoto Taiji, Toshikazu Ebisuzaki, Daiichiro Sugimoto
-body problem. SC (1994)
Eiichiro Kokubo, Junichiro Makino, Makoto Taiji
HARP-1: A Special-Purpose Computer for itN-body Simulation with the Hermite Integrator. HICSS (1) (1994)