Kenji Yasuoka

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 10

Top Topics

Molecular Dynamics

Machine Learning

Random Number Generators

Generative Model

Top Venues

J. Chem. Inf. Model.

J. Comput. Chem.

Appl. Math. Comput.

Publications

Akie Kowaguchi, Paul E. Brumby, Kenji Yasuoka
Hysteresis Elimination for an Anisotropic Liquid-Crystal Model via Molecule Design and Replica-Exchange Optimization. J. Chem. Inf. Model. 64 (12) (2024)
Ryo Kawada, Katsuhiro Endo, Kenji Yasuoka, Hidekazu Kojima, Nobuyuki Matubayasi
Prediction of Water Diffusion in Wide Varieties of Polymers with All-Atom Molecular Dynamics Simulations and Deep Generative Models. J. Chem. Inf. Model. 63 (1) (2023)
Linyu Peng, Noriyoshi Arai, Kenji Yasuoka
A stochastic Hamiltonian formulation applied to dissipative particle dynamics. Appl. Math. Comput. 426 (2022)
Ikki Yasuda, Yusei Kobayashi, Katsuhiro Endo, Yoshihiro Hayakawa, Kazuhiko Fujiwara, Kuniaki Yajima, Noriyoshi Arai, Kenji Yasuoka
Prediction of transport property via machine learning molecular movements. CoRR (2022)
Akie Kowaguchi, Katsuhiro Endo, Paul E. Brumby, Kentaro Nomura, Kenji Yasuoka
Optimal Replica-Exchange Molecular Simulations in Combination with Evolution Strategies. J. Chem. Inf. Model. 62 (24) (2022)
Kiyoshiro Okada, Paul E. Brumby, Kenji Yasuoka
An Efficient Random Number Generation Method for Molecular Simulation. J. Chem. Inf. Model. 62 (1) (2022)
Linyu Peng, Noriyoshi Arai, Kenji Yasuoka
A stochastic Hamiltonian formulation applied to dissipative particle dynamics. CoRR (2022)
Ryo Kawada, Katsuhiro Endo, Daisuke Yuhara, Kenji Yasuoka
MD-GAN with multi-particle input: the machine learning of long-time molecular behavior from short-time MD data. CoRR (2022)
Kai Pua, Daisuke Yuhara, Sho Ayuba, Kenji Yasuoka
Dataflow programming for the analysis of molecular dynamics with AViS, an analysis and visualization software application. CoRR (2019)
Katsuhiro Endo, Katsufumi Tomobe, Kenji Yasuoka
Multi-Step Time Series Generator for Molecular Dynamics. AAAI (2018)
Takuma Nozawa, Kazuaki Z. Takahashi, Tetsu Narumi, Kenji Yasuoka
Comparison of the accuracy of periodic reaction field methods in molecular dynamics simulations of a model liquid crystal system. J. Comput. Chem. 36 (32) (2015)
Rio Yokota, Lorena A. Barba, Tetsu Narumi, Kenji Yasuoka
Petascale turbulence simulation using a highly parallel fast multipole method on GPUs. Comput. Phys. Commun. 184 (3) (2013)
Minoru Oikawa, Atsushi Kawai, Kentaro Nomura, Kenji Yasuoka, Kazuyuki Yoshikawa, Tetsu Narumi
DS-CUDA: A Middleware to Use Many GPUs in the Cloud Environment. SC Companion (2012)
Siegfried Höfinger, Angela Acocella, Sergiu C. Pop, Tetsu Narumi, Kenji Yasuoka, Titus Beu, Francesco Zerbetto
GPU-accelerated computation of electron transfer. J. Comput. Chem. 33 (29) (2012)
Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Francesco Zerbetto, Siegfried Höfinger
Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3. Comput. J. 54 (7) (2011)
Rio Yokota, Tetsu Narumi, Lorena A. Barba, Kenji Yasuoka
Petascale turbulence simulation using a highly parallel fast multipole method CoRR (2011)
Rio Yokota, Tetsu Narumi, Ryuji Sakamaki, Shun Kameoka, Shinnosuke Obi, Kenji Yasuoka
Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence. Comput. Phys. Commun. 180 (11) (2009)
Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji
-body simulations on GPUs with applications in both astrophysics and turbulence. SC (2009)
Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried Höfinger
Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach. J. Comput. Chem. 30 (14) (2009)
Tetsu Narumi, Shun Kameoka, Makoto Taiji, Kenji Yasuoka
Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model. SIAM J. Sci. Comput. 30 (6) (2008)
Tetsu Narumi, Ryuji Sakamaki, Shun Kameoka, Kenji Yasuoka
Overheads in Accelerating Molecular Dynamics Simulations with GPUs. PDCAT (2008)
Bruce G. Elmegreen, Roger H. Koch, Manfred E. Schabes, Tiffany Crawford, Toshikazu Ebisuzaki, Hideaki Furusawa, Tetsu Narumi, Ryutaro Susukita, Kenji Yasuoka
Simulations of magnetic materials with MDGRAPE-2. IBM J. Res. Dev. 48 (2) (2004)
Kholmirzo Kholmurodov, William Smith, Kenji Yasuoka, Thomas A. Darden, Toshikazu Ebisuzaki
A smooth-particle mesh Ewald method for DL_POLY molecular dynamics simulation package on the Fujitsu VPP700. J. Comput. Chem. 21 (13) (2000)
Tetsu Narumi, Ryutaro Susukita, Takahiro Koishi, Kenji Yasuoka, Hideaki Furusawa, Atsushi Kawai, Toshikazu Ebisuzaki
1.34 Tflops Molecular Dynamics Simulation for NaCl with a Special-Purpose Computer: MDM. SC (2000)