Kimberly Glass

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 14

Top Topics

Gene Regulatory

Top Venues

Publications

Enakshi Saha, Viola Fanfani, Panagiotis Mandros, Marouen Ben Guebila, Jonas Fischer, Katherine H. Shutta, Kimberly Glass, Dawn L. DeMeo, Camila Miranda Lopes-Ramos, John Quackenbush
BONOBO: Bayesian Optimized Sample-Specific Networks Obtained by Omics Data. RECOMB (2024)
Ping-Han Hsieh, Camila Miranda Lopes-Ramos, Manuela Zucknick, Geir Kjetil Sandve, Kimberly Glass, Marieke L. Kuijjer
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. Bioinform. 39 (10) (2023)
Marouen Ben Guebila, Camila M. Lopes-Ramos, Deborah Weighill, Abhijeet Rajendra Sonawane, Rebekka Burkholz, Behrouz Shamsaei, John Platig, Kimberly Glass, Marieke L. Kuijjer, John Quackenbush
GRAND: a database of gene regulatory network models across human conditions. Nucleic Acids Res. 50 (D1) (2022)
Deborah Weighill, Marouen Ben Guebila, Camila M. Lopes-Ramos, Kimberly Glass, John Quackenbush, John Platig, Rebekka Burkholz
Gene Regulatory Network Inference as Relaxed Graph Matching. AAAI (2021)
Marieke L. Kuijjer, Maud Fagny, Alessandro Marin, John Quackenbush, Kimberly Glass
PUMA: PANDA Using MicroRNA Associations. Bioinform. 36 (18) (2020)
Tim Coleman, Lucas Mentch, Kimberly Glass, David Gotz, Nils Gehlenborg, Arlene E. Chung
Precision VISSTA: Machine Learning Prediction and Inference for Bring-Your-Own-Device (BYOD) mHealth Data. AMIA (2019)
Arlene E. Chung, Kimberly Glass, Jacob Leisey-Bartsch, Lucas Mentch, Nils Gehlenborg, David Gotz
Precision VISSTA: Bring-Your-Own-Device (BYOD) mHealth Data for Precision Health. AMIA (2019)
Daniel Schlauch, Joseph N. Paulson, Albert Young, Kimberly Glass, John Quackenbush
Estimating gene regulatory networks with pandaR. Bioinform. 33 (14) (2017)
Reiko Nishihara, Kimberly Glass, Kosuke Mima, Tsuyoshi Hamada, Jonathan A. Nowak, Zhi Rong Qian, Peter Kraft, Edward L. Giovannucci, Charles S. Fuchs, Andrew T. Chan, John Quackenbush, Shuji Ogino, Jukka-Pekka Onnela
Biomarker correlation network in colorectal carcinoma by tumor anatomic location. BMC Bioinform. 18 (1) (2017)
Joseph N. Paulson, Cho-Yi Chen, Camila M. Lopes-Ramos, Marieke L. Kuijjer, John Platig, Abhijeet R. Sonawane, Maud Fagny, Kimberly Glass, John Quackenbush
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. BMC Bioinform. 18 (1) (2017)
David G. P. van IJzendoorn, Kimberly Glass, John Quackenbush, Marieke L. Kuijjer
PyPanda: a Python package for gene regulatory network reconstruction. Bioinform. 32 (21) (2016)
Kimberly Glass, Michelle Girvan
Finding New Order in Biological Functions from the Network Structure of Gene Annotations. PLoS Comput. Biol. 11 (11) (2015)
Kimberly Glass, John Quackenbush, Jeremy Kepner
High performance computing of gene regulatory networks using a message-passing model. HPEC (2015)
Kimberly Glass, John Quackenbush, Dimitrios Spentzos, Benjamin Haibe-Kains, Guo-Cheng Yuan
A network model for angiogenesis in ovarian cancer. BMC Bioinform. 16 (2015)
Kimberly Glass, John Quackenbush, Edwin K. Silverman, Bartolome Celli, Stephen I. Rennard, Guo-Cheng Yuan, Dawn L. DeMeo
Sexually-dimorphic targeting of functionally-related genes in COPD. BMC Syst. Biol. 8 (2014)