Brent S. Pedersen

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 9

Top Topics

Statistical Significance

Linkage Disequilibrium

High Throughput

Top Venues

Nat. Comput. Sci.

Publications

Erik Garrison, Zev N. Kronenberg, Eric T. Dawson, Brent S. Pedersen, Pjotr Prins
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar. PLoS Comput. Biol. 18 (5) (2022)
Michael J. Cormier, Brent S. Pedersen, Pinar Bayrak-Toydemir, Aaron R. Quinlan
Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies. BMC Bioinform. 23 (1) (2022)
Hao Hou, Brent S. Pedersen, Aaron R. Quinlan
Author Correction: Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nat. Comput. Sci. 2 (2) (2022)
Hao Hou, Brent S. Pedersen, Aaron R. Quinlan
Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nat. Comput. Sci. 1 (6) (2021)
Jonathan R. Belyeu, Thomas A. Sasani, Brent S. Pedersen, Aaron R. Quinlan
Unfazed: parent-of-origin detection for large and small de novo variants. Bioinform. 37 (24) (2021)
Brent S. Pedersen, Aaron R. Quinlan
Mosdepth: quick coverage calculation for genomes and exomes. Bioinform. 34 (5) (2018)
Brent S. Pedersen, Aaron R. Quinlan
hts-nim: scripting high-performance genomic analyses. Bioinform. 34 (19) (2018)
Brent S. Pedersen, Aaron R. Quinlan
cyvcf2: fast, flexible variant analysis with Python. Bioinform. 33 (12) (2017)
R. Daniel Kortschak, Brent S. Pedersen, David L. Adelson
bíogo/hts: high throughput sequence handling for the Go language. J. Open Source Softw. 2 (10) (2017)
Matthew D. Shirley, Zhaorong Ma, Brent S. Pedersen, Sarah J. Wheelan
Efficient "pythonic" access to FASTA files using pyfaidx. PeerJ Prepr. 3 (2015)
Subhajyoti De, Brent S. Pedersen, Katherina J. Kechris
The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment. Briefings Bioinform. 15 (6) (2014)
Brent S. Pedersen, Ivana V. Yang, Subhajyoti De
CruzDB: software for annotation of genomic intervals with UCSC genome-browser database. Bioinform. 29 (23) (2013)
Brent S. Pedersen, David A. Schwartz, Ivana V. Yang, Katherina J. Kechris
-values. Bioinform. 28 (22) (2012)
Haibao Tang, Eric Lyons, Brent S. Pedersen, James C. Schnable, Andrew H. Paterson, Michael Freeling
Screening synteny blocks in pairwise genome comparisons through integer programming. BMC Bioinform. 12 (2011)
Brent S. Pedersen, Haibao Tang, Michael Freeling
Gobe: an interactive, web-based tool for comparative genomic visualization. Bioinform. 27 (7) (2011)
Ryan K. Dale, Brent S. Pedersen, Aaron R. Quinlan
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Bioinform. 27 (24) (2011)
Laurence D. Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Marco Dall'Olio, Daniel C. Swan, Lars Juhl Jensen, Simon J. Cockell, Brent S. Pedersen, Mary E. Mangan, Christopher A. Miller, István Albert
BioStar: An Online Question & Answer Resource for the Bioinformatics Community. PLoS Comput. Biol. 7 (10) (2011)