Subhajyoti De

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 10

Top Topics

Histopathology Images

Top Venues

Briefings Bioinform.

Publications

Bassel Ghaddar, Subhajyoti De
Hierarchical and automated cell-type annotation and inference of cancer cell of origin with Census. Bioinform. 39 (12) (2023)
Bassel Ghaddar, Martin J. Blaser, Subhajyoti De
Denoising sparse microbial signals from single-cell sequencing of mammalian host tissues. Nat. Comput. Sci. 3 (9) (2023)
Hui Qu, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Zhennan Yan, Kang Li, Gregory M. Riedlinger, Subhajyoti De, Shaoting Zhang, Dimitris N. Metaxas
Weakly Supervised Deep Nuclei Segmentation Using Partial Points Annotation in Histopathology Images. CoRR (2020)
Hui Qu, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Zhennan Yan, Kang Li, Gregory M. Riedlinger, Subhajyoti De, Shaoting Zhang, Dimitris N. Metaxas
Weakly Supervised Deep Nuclei Segmentation Using Partial Points Annotation in Histopathology Images. IEEE Trans. Medical Imaging 39 (11) (2020)
Hui Qu, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Gregory M. Riedlinger, Subhajyoti De, Dimitris N. Metaxas
Weakly Supervised Deep Nuclei Segmentation using Points Annotation in Histopathology Images. MIDL (2019)
Hui Qu, Zhennan Yan, Gregory M. Riedlinger, Subhajyoti De, Dimitris N. Metaxas
Improving Nuclei/Gland Instance Segmentation in Histopathology Images by Full Resolution Neural Network and Spatial Constrained Loss. MICCAI (1) (2019)
Hui Qu, Gregory M. Riedlinger, Pengxiang Wu, Qiaoying Huang, Jingru Yi, Subhajyoti De, Dimitris N. Metaxas
Joint Segmentation and Fine-Grained Classification of Nuclei in Histopathology Images. ISBI (2019)
Igor B. Rogozin, Youri I. Pavlov, Alexander Goncearenco, Subhajyoti De, Artem G. Lada, Eugenia Poliakov, Anna R. Panchenko, David N. Cooper
Mutational signatures and mutable motifs in cancer genomes. Briefings Bioinform. 19 (6) (2018)
Kyle S. Smith, Vinod Kumar Yadav, Shanshan Pei, Daniel A. Pollyea, Craig T. Jordan, Subhajyoti De
SomVarIUS: somatic variant identification from unpaired tissue samples. Bioinform. 32 (6) (2016)
Jennifer Hintzsche, Jihye Kim, Vinod Kumar Yadav, Carol Amato, Steven E. Robinson, Eric Seelenfreund, Yiqun Shellman, Joshua Wisell, Allison Applegate, Martin McCarter, Neil Box, John Tentler, Subhajyoti De, William A. Robinson, Aik Choon Tan
IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples. J. Am. Medical Informatics Assoc. 23 (4) (2016)
Vinod Kumar Yadav, Subhajyoti De
An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples. Briefings Bioinform. 16 (2) (2015)
Ondrej Podlaha, Subhajyoti De, Mithat Gonen, Franziska Michor
Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells. PLoS Comput. Biol. 10 (6) (2014)
Subhajyoti De, Brent S. Pedersen, Katherina J. Kechris
The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment. Briefings Bioinform. 15 (6) (2014)
Brent S. Pedersen, Ivana V. Yang, Subhajyoti De
CruzDB: software for annotation of genomic intervals with UCSC genome-browser database. Bioinform. 29 (23) (2013)
Diego Miranda-Saavedra, Subhajyoti De, Matthew W. B. Trotter, Sarah A. Teichmann, Berthold Göttgens
BloodExpress: a database of gene expression in mouse haematopoiesis. Nucleic Acids Res. 37 (Database-Issue) (2009)