Aaron R. Quinlan

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 12

Top Topics

Association Studies

Structural Constraints

Top Venues

Nat. Comput. Sci.

Publications

Peter McHale, Aaron R. Quinlan
trfermikit: a tool to discover VNTR-associated deletions. Bioinform. 38 (5) (2022)
Michael J. Cormier, Brent S. Pedersen, Pinar Bayrak-Toydemir, Aaron R. Quinlan
Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies. BMC Bioinform. 23 (1) (2022)
Thomas J. Nicholas, Michael J. Cormier, Aaron R. Quinlan
Annotation of structural variants with reported allele frequencies and related metrics from multiple datasets using SVAFotate. BMC Bioinform. 23 (1) (2022)
Hao Hou, Brent S. Pedersen, Aaron R. Quinlan
Author Correction: Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nat. Comput. Sci. 2 (2) (2022)
Hao Hou, Brent S. Pedersen, Aaron R. Quinlan
Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nat. Comput. Sci. 1 (6) (2021)
Jonathan R. Belyeu, Thomas A. Sasani, Brent S. Pedersen, Aaron R. Quinlan
Unfazed: parent-of-origin detection for large and small de novo variants. Bioinform. 37 (24) (2021)
Jordan A. Berg, Jonathan R. Belyeu, Jeffrey T. Morgan, Yeyun Ouyang, Alex J. Bott, Aaron R. Quinlan, Jason Gertz, Jared Rutter
XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data. PLoS Comput. Biol. 16 (1) (2020)
Brent S. Pedersen, Aaron R. Quinlan
Mosdepth: quick coverage calculation for genomes and exomes. Bioinform. 34 (5) (2018)
Brent S. Pedersen, Aaron R. Quinlan
hts-nim: scripting high-performance genomic analyses. Bioinform. 34 (19) (2018)
Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander V. Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Brent S. Pedersen, Aaron R. Quinlan
cyvcf2: fast, flexible variant analysis with Python. Bioinform. 33 (12) (2017)
Ryan M. Layer, Aaron R. Quinlan
A Parallel Algorithm for $N$-Way Interval Set Intersection. Proc. IEEE 105 (3) (2017)
Michael R. Lindberg, Ira M. Hall, Aaron R. Quinlan
Population-based structural variation discovery with Hydra-Multi. Bioinform. 31 (8) (2015)
Nicholas J. Loman, Aaron R. Quinlan
Poretools: a toolkit for analyzing nanopore sequence data. Bioinform. 30 (23) (2014)
Ryan M. Layer, Kevin Skadron, Gabriel Robins, Ira M. Hall, Aaron R. Quinlan
Binary Interval Search: a scalable algorithm for counting interval intersections. Bioinform. 29 (1) (2013)
Umadevi Paila, Brad A. Chapman, Rory Kirchner, Aaron R. Quinlan
GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations. PLoS Comput. Biol. 9 (7) (2013)
Ryan K. Dale, Brent S. Pedersen, Aaron R. Quinlan
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Bioinform. 27 (24) (2011)
Derek W. Barnett, Erik K. Garrison, Aaron R. Quinlan, Michael Strömberg, Gabor T. Marth
BamTools: a C++ API and toolkit for analyzing and managing BAM files. Bioinform. 27 (12) (2011)
Aaron R. Quinlan, Ira M. Hall
BEDTools: a flexible suite of utilities for comparing genomic features. Bioinform. 26 (6) (2010)