Andrey A. Mironov

Publication Activity (10 Years)

Years Active: 1990-2023
Publications (10 Years): 5

Top Topics

Statistical Significance

Top Venues

Database J. Biol. Databases Curation

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Asia Mendelevich, Saumya Gupta, Aleksei Pakharev, Athanasios Teodosiadis, Andrey A. Mironov, Alexander A. Gimelbrant
Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale. Bioinform. 39 (Supplement-1) (2023)
Grigory Ryabykh, S. V. Kuznetsov, Y. D. Korostelev, A. I. Sigorskikh, A. A. Zharikova, Andrey A. Mironov
RNA-Chrom: a manually curated analytical database of RNA-chromatin interactome. Database J. Biol. Databases Curation 2023 (2023)
Andrey A. Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine
An extended catalogue of tandem alternative splice sites in human tissue transcriptomes. PLoS Comput. Biol. 17 (4) (2021)
Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander V. Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Elena D. Stavrovskaya, Tejasvi Niranjan, Elana J. Fertig, Sarah J. Wheelan, Alexander V. Favorov, Andrey A. Mironov
StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data. Bioinform. 33 (20) (2017)
Ruslan A. Soldatov, Svetlana V. Vinogradova, Andrey A. Mironov
RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments. Bioinform. 30 (4) (2014)
Elena D. Stavrovskaya, Andrey A. Mironov, Alexander V. Favorov
Fast assessment of the correlation between coverage-like genomic features and its statistical significance. IWBBIO (2013)
Alexander V. Favorov, Loris Mularoni, Leslie M. Cope, Yulia A. Medvedeva, Andrey A. Mironov, Vsevolod J. Makeev, Sarah J. Wheelan
Exploring Massive, Genome Scale Datasets with the GenometriCorr Package. PLoS Comput. Biol. 8 (5) (2012)
Dmitri D. Pervouchine, Ekaterina Khrameeva, Marina Pichugina, Olexii Nikolaienko, Mikhail S. Gelfand, Petr Rubtsov, Andrey A. Mironov
Evidence for Widespread Association of Mammalian Splicing and Conserved Long-Range RNA Structures. RECOMB (2012)
Anna A. Nilulova, Alexander V. Favorov, Vsevolod J. Makeev, Andrey A. Mironov
A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure. BIOINFORMATICS (2012)
Elena D. Stavrovskaya, Andrey A. Mironov, Dmitry A. Rodionov, Inna Dubchak, Pavel S. Novichkov
Automated Regulon Content Prediction and Estimation of PWM Quality. BIOINFORMATICS (2012)
Pavel S. Novichkov, Dmitry A. Rodionov, Elena D. Stavrovskaya, Elena S. Novichkova, Alexei E. Kazakov, Mikhail S. Gelfand, Adam P. Arkin, Andrey A. Mironov, Inna Dubchak
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Pavel V. Mazin, Mikhail S. Gelfand, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Anatoly R. Rubinov, Robert B. Russell, Olga V. Kalinina
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies. Algorithms Mol. Biol. 5 (2010)
Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Dmitry A. Ravcheev, Dmitry A. Rodionov, Alexei G. Vitreschak
Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk). ISBRA (2009)
Alexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam P. Arkin, Andrey A. Mironov, Mikhail S. Gelfand, Inna Dubchak
RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res. 35 (Database-Issue) (2007)
Gregory Kucherov, Andrey A. Mironov, Mikhail A. Roytberg
An Overview of the Algorithmic Session of MCCMB'05. J. Bioinform. Comput. Biol. 4 (2) (2006)
Ludmila V. Danilova, Dmitri D. Pervouchine, Alexander V. Favorov, Andrey A. Mironov
Rnakinetics: a Web Server that Models Secondary Structure Kinetics of an Elongating RNA. J. Bioinform. Comput. Biol. 4 (2) (2006)
A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov
Alternative splicing and protein function. BMC Bioinform. 6 (2005)
Alexander V. Favorov, Mikhail S. Gelfand, Anna V. Gerasimova, Dmitry A. Ravcheev, Andrey A. Mironov, Vsevolod J. Makeev
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length. Bioinform. 21 (10) (2005)
Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Elena D. Stavrovskaya, Andrey A. Mironov
Two genetic algorithms for identification of regulatory signals. Silico Biol. 3 (1-2) (2003)
M. V. Baytaluk, Mikhail S. Gelfand, Andrey A. Mironov
Exact mapping of prokaryotic gene starts. Briefings Bioinform. 3 (2) (2002)
Andrey A. Mironov, Pavel S. Novichkov, Mikhail S. Gelfand
Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors. Bioinform. 17 (1) (2001)
Pavel S. Novichkov, Mikhail S. Gelfand, Andrey A. Mironov
Gene recognition in eukaryotic DNA by comparison of genomic sequences. Bioinform. 17 (11) (2001)
Mikhail S. Gelfand, Pavel S. Novichkov, Elena S. Novichkova, Andrey A. Mironov
Comparative Analysis of Regulatory Patterns in Bacterial Genomes. Briefings Bioinform. 1 (4) (2000)
Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner
Algorithms and software for support of gene identification experiments. Bioinform. 14 (1) (1998)
Andrey A. Mironov, Pavel A. Pevzner
SST versus EST in Gene Recognition (Invited Paper). SPIRE (1998)
Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand
Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. German Conference on Bioinformatics (1998)
Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner
Spliced Alignment: A New Approach to Gene Recognition. CPM (1996)
Andrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner
DNASUN: a package of computer programs for the biotechnology laboratory. Comput. Appl. Biosci. 11 (3) (1995)
A. V. Grigorjev, Andrey A. Mironov
Mapping DNA by stochastic relaxation: a new approach to fragment sizes. Comput. Appl. Biosci. 6 (2) (1990)