Olga V. Kalinina

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 10

Top Topics

Protein Interaction

Shallow Parsing

Top Venues

J. Cheminformatics

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Roman Joeres, Daniel Bojar, Olga V. Kalinina
GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES. J. Cheminformatics 15 (1) (2023)
Sanjay Kumar Srikakulam, Sebastian Keller, Fawaz Dabbaghie, Robert Bals, Olga V. Kalinina
MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants. Bioinform. 39 (3) (2023)
Carla F. Sousa, Mohamed A. M. Kamal, Robert Richter, Kalanika Elamaldeniya, Rolf W. Hartmann, Martin Empting, Claus-Michael Lehr, Olga V. Kalinina
Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane. J. Chem. Inf. Model. 62 (20) (2022)
Galya V. Klink, Olga V. Kalinina, Georgii A. Bazykin
Phylogenetic inference of changes in amino acid propensities with single-position resolution. PLoS Comput. Biol. 18 (2) (2022)
Zakaria Louadi, Kevin Yuan, Alexander Greß, Olga Tsoy, Olga V. Kalinina, Jan Baumbach, Tim Kacprowski, Markus List
DIGGER: exploring the functional role of alternative splicing in protein interactions. Nucleic Acids Res. 49 (Database-Issue) (2021)
Andrey A. Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine
An extended catalogue of tandem alternative splice sites in human tissue transcriptomes. PLoS Comput. Biol. 17 (4) (2021)
Alexander Greß, Olga V. Kalinina
SphereCon - a method for precise estimation of residue relative solvent accessible area from limited structural information. Bioinform. 36 (11) (2020)
Alexander Greß, Vasily Ramensky, Joachim Büch, Andreas Keller, Olga V. Kalinina
StructMAn: annotation of single-nucleotide polymorphisms in the structural context. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Sabine C. Mueller, Christina Backes, Alexander Greß, Nina Baumgarten, Olga V. Kalinina, Andreas Moll, Oliver Kohlbacher, Eckart Meese, Andreas Keller
BALL-SNPgp - from genetic variants toward computational diagnostics. Bioinform. 32 (12) (2016)
Olga S. Voitenko, Andi Dhroso, Anna Feldmann, Dmitry Korkin, Olga V. Kalinina
Patterns of amino acid conservation in human and animal immunodeficiency viruses. Bioinform. 32 (17) (2016)
Mazen Ahmad, Olga V. Kalinina, Thomas Lengauer
Entropy gain due to water release upon ligand binding. J. Cheminformatics 6 (S-1) (2014)
Olga V. Kalinina, Oliver Wichmann, Gordana Apic, Robert B. Russell
ProtChemSI: a network of protein-chemical structural interactions. Nucleic Acids Res. 40 (Database-Issue) (2012)
Olga V. Kalinina, Oliver Wichmann, Gordana Apic, Robert B. Russell
Combinations of Protein-Chemical Complex Structures Reveal New Targets for Established Drugs. PLoS Comput. Biol. 7 (5) (2011)
Pavel V. Mazin, Mikhail S. Gelfand, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Anatoly R. Rubinov, Robert B. Russell, Olga V. Kalinina
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies. Algorithms Mol. Biol. 5 (2010)
Olga V. Kalinina, Mikhail S. Gelfand, Robert B. Russell
Combining specificity determining and conserved residues improves functional site prediction. BMC Bioinform. 10 (2009)
Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Olga V. Kalinina, Vsevolod J. Makeev, Roman A. Sutormin, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova
The channel in transporters is formed by residues that are rare in transmembrane helices. Silico Biol. 3 (1-2) (2003)