MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants.
Sanjay Kumar SrikakulamSebastian KellerFawaz DabbaghieRobert BalsOlga V. KalininaPublished in: Bioinform. (2023)
Keyphrases
- sequence data
- genome sequences
- bloom filter
- sequence analysis
- nucleotide sequences
- data structure
- regulatory elements
- sequence classification
- human genome
- sequence databases
- profile hidden markov models
- genetic variation
- biological sequences
- databases
- dna sequences
- mass spectrometry
- protein sequences
- database
- record linkage
- gene clusters
- spatio temporal