Dmitry Korkin

Publication Activity (10 Years)

Years Active: 2002-2022
Publications (10 Years): 9

Top Topics

Protein Interaction

Machine Learning

High Throughput

Top Venues

Database J. Biol. Databases Curation

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Maksim Kitsak, Alexander A. Ganin, Ahmed Elmokashfi, Hongzhu Cui, Daniel A. Eisenberg, David L. Alderson, Dmitry Korkin, Igor Linkov
Finding shortest and nearly shortest path nodes in large substantially incomplete networks. CoRR (2022)
Tuan-Dung Le, Phuong D. Nguyen, Dmitry Korkin, Thanh Thieu
PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web. Database J. Biol. Databases Curation 2022 (2022) (2022)
Tuan-Dung Le, Phuong D. Nguyen, Dmitry Korkin, Thanh Thieu
A high-throughput, online tool for investigating host-pathogen macromolecular interactions buried in scientific literature. CHASE (2021)
Haadi Mombini, Ruojun Li, Yixin Zhang, Dmitry Korkin, Bengisu Tulu
An Exploratory Study of Social Media Analysis for Rare Diseases Using Machine Learning Algorithms: A Case Study of Trigeminal Neuralgia. HICSS (2020)
Hongzhu Cui, Chong Zhou, Xinyu Dai, Yuting Liang, Randy C. Paffenroth, Dmitry Korkin
Boosting gene expression clustering with system-wide biological information: a robust autoencoder approach. Int. J. Comput. Biol. Drug Des. 13 (1) (2020)
Oleksandr Narykov, Dmytro Bogatov, Dmitry Korkin
DISPOT: a simple knowledge-based protein domain interaction statistical potential. Bioinform. 35 (24) (2019)
Olga S. Voitenko, Andi Dhroso, Anna Feldmann, Dmitry Korkin, Olga V. Kalinina
Patterns of amino acid conservation in human and animal immunodeficiency viruses. Bioinform. 32 (17) (2016)
Xingyan Kuang, Andi Dhroso, Jing Ginger Han, Chi-Ren Shyu, Dmitry Korkin
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. Database J. Biol. Databases Curation 2016 (2016)
Hongzhu Cui, Dmitry Korkin
Effect-specific analysis of pathogenic SNVs in human interactome: Leveraging edge-based network robustness. EMBC (2016)
Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu
An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (2) (2015)
Nan Zhao, Jing Ginger Han, Chi-Ren Shyu, Dmitry Korkin
Determining Effects of Non-synonymous SNPs on Protein-Protein Interactions using Supervised and Semi-supervised Learning. PLoS Comput. Biol. 10 (5) (2014)
Dmitriy Shin, Gerald C. Arthur, Mihail Popescu, Dmitry Korkin, Chi-Ren Shyu
Uncovering influence links in molecular knowledge networks to streamline personalized medicine. J. Biomed. Informatics 52 (2014)
Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu
PBSalign: Sequence-independent local alignment of protein binding sites. BIBM (2013)
Bin Pang, Nan Zhao, Dmitry Korkin, Chi-Ren Shyu
Fast protein binding site comparisons using visual words representation. Bioinform. 28 (10) (2012)
Xingyan Kuang, Jing Ginger Han, Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin
DOMMINO: a database of macromolecular interactions. Nucleic Acids Res. 40 (Database-Issue) (2012)
Thanh Thieu, Sneha Joshi, Samantha Warren, Dmitry Korkin
Literature mining of host-pathogen interactions: comparing feature-based supervised learning and language-based approaches. Bioinform. 28 (6) (2012)
Bin Pang, Xingyan Kuang, Nan Zhao, Dmitry Korkin, Chi-Ren Shyu
PBSword: a web server for searching similar protein-protein binding sites. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Qingguo Wang, Dmitry Korkin, Yi Shang
A Fast Multiple Longest Common Subsequence (MLCS) Algorithm. IEEE Trans. Knowl. Data Eng. 23 (3) (2011)
Qingguo Wang, Mian Pan, Yi Shang, Dmitry Korkin
A Fast Heuristic Search Algorithm for Finding the Longest Common Subsequence of Multiple Strings. AAAI (2010)
Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin
An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches. BIBM (2010)
Chi-Ren Shyu, Bin Pang, Pin-Hao Chi, Nan Zhao, Dmitry Korkin, Dong Xu
ProteinDBS v2.0: a web server for global and local protein structure search. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Qingguo Wang, Dmitry Korkin, Yi Shang
Efficient Dominant Point Algorithms for the Multiple Longest Common Subsequence (MLCS) Problem. IJCAI (2009)
Pin-Hao Chi, Bin Pang, Dmitry Korkin, Chi-Ren Shyu
Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments. Bioinform. 25 (19) (2009)
Dmitry Korkin, Qingguo Wang, Yi Shang
An Efficient Parallel Algorithm for the Multiple Longest Common Subsequence (MLCS) Problem. ICPP (2008)
Dmitry Korkin, Fred P. Davis, Frank Alber, Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B. Kennedy, Andrej Sali
Structural Modeling of Protein Interactions by Analogy: Application to PSD-95. PLoS Comput. Biol. 2 (11) (2006)
Dmitry Korkin, Lev Goldfarb
Multiple genome rearrangement: a general approach via the evolutionary genome graph. ISMB (2002)