Chi-Ren Shyu

ORCID

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 43

Top Venues

AMIA

BIBM

J. Biomed. Informatics

IEEE J. Biomed. Health Informatics

Publications

Yulia I. Nussbaum, K. S. M. Tozammel Hossain, Jussuf T. Kaifi, Wesley C. Warren, Chi-Ren Shyu, Jonathan B. Mitchem
Identifying gene expression programs in single-cell RNA-seq data using linear correlation explanation. J. Biomed. Informatics 154 (2024)
Shu-Kai Chang, Danlu Liu, Jonathan B. Mitchem, Christos Papageorgiou, Jussuf T. Kaifi, Chi-Ren Shyu
Understanding common key indicators of successful and unsuccessful cancer drug trials using a contrast mining framework on ClinicalTrials.gov. J. Biomed. Informatics 139 (2023)
Yu Li, Rana Das, Cuong Duong, Teng-Teeh Lim, Timothy L. Haithcoat, Ilker Ersoy, Chi-Ren Shyu
Automated Detection of Poultry Farms from Aerial Images for Actionable AI System toward Biosecurity Applications. AIPR (2023)
Yan Zhuang, Chi-Ren Shyu, Shenda Hong, Pengfei Li, Luxia Zhang
Self-sovereign identity empowered non-fungible patient tokenization for health information exchange using blockchain technology. Comput. Biol. Medicine 157 (2023)
Zon-Yin Shae, Kun-Yi Chen, Chi-Yu Chang, Yuan-Yu Tsai, Che-Yi Chou, William Baskett, Chi-Ren Shyu, Jeffrey J. P. Tsai
Thoughts on Non-IID Data Impact in Healthcare with Federated Learning Medical Blockchain. CogMI (2022)
Erin M. Tallon, Mark Clements, Chi-Ren Shyu
Found in Translation: Transforming Rules-Based Diabetes Phenotyping Algorithms into Reproducible Diabetes Cohorts from Real-World Data. AMIA (2022)
Danlu Liu, Yu Li, William Baskett, Dan Lin, Chi-Ren Shyu
RHPTree - Risk Hierarchical Pattern Tree for Scalable Long Pattern Mining. ACM Trans. Knowl. Discov. Data 16 (4) (2022)
Zainab Al-Taie, Danlu Liu, Jonathan B. Mitchem, Christos Papageorgiou, Jussuf T. Kaifi, Wesley C. Warren, Chi-Ren Shyu
Explainable artificial intelligence in high-throughput drug repositioning for subgroup stratifications with interventionable potential. J. Biomed. Informatics 118 (2021)
Erin M. Tallon, Mark Clements, Danlu Liu, Katrina Boles, Chi-Ren Shyu
A Deep Exploratory Mining Approach for Discovering Associations between Family History of Type 1 Diabetes and Autoimmune and Related Conditions. AMIA (2020)
Danlu Liu, William Baskett, David Q. Beversdorf, Chi-Ren Shyu
Exploratory Data Mining for Subgroup Cohort Discoveries and Prioritization. IEEE J. Biomed. Health Informatics 24 (5) (2020)
Zainab Al-Taie, Danlu Liu, Christos Papageorgiou, Jussuf T. Kaifi, Jonathan B. Mitchem, Chi-Ren Shyu
Drug Repositioning for Colorectal Cancer Patient Subgroups Using Exploratory Mining and Network Analysis. AMIA (2020)
Yan Zhuang, Lincoln Sheets, Xiyuan Gao, Yuanyuan Shen, Zonyin Shae, Jeffrey J. P. Tsai, Chi-Ren Shyu
Development of A Blockchain Framework for Virtual Clinical Trials. AMIA (2020)
Danlu Liu, Zainab Al-Taie, Yuanyuan Shen, Christos Papageorgiou, Chi-Ren Shyu
Differentiating Genetic Risk Factors Between Triple Negative and Luminal Breast Cancer Subtypes Using Long Contrast Patterns Mining. AMIA (2020)
Yuanyuan Shen, Danlu Liu, Chi-Ren Shyu, Jonathan B. Mitchem
Using novel exploratory subgroup mining to determine complication patterns of post colectomy based on hospital characteristics. AMIA (2020)
Olha Kholod, Chi-Ren Shyu, Jonathan B. Mitchem, Jussuf T. Kaifi, Dmitriy Shin
Identifying patient-specific flow of signal transduction perturbed by multiple single-nucleotide alterations. Quant. Biol. 8 (4) (2020)
Yan Zhuang, Lincoln R. Sheets, Yin-Wu Chen, Zonyin Shae, Jeffrey J. P. Tsai, Chi-Ren Shyu
A Patient-Centric Health Information Exchange Framework Using Blockchain Technology. IEEE J. Biomed. Health Informatics 24 (8) (2020)
Tim A. Green, Stevan Whitt, Jeffery L. Belden, Sanda Erdelez, Chi-Ren Shyu
Medical calculators: Prevalence, and barriers to use. Comput. Methods Programs Biomed. 179 (2019)
Pericles S. Giannaris, Cynthia Tang, Olha Kholod, Steve Hanson, Chi-Ren Shyu, Richard D. Hammer, Dong Xu, Dmitriy Shin
Modeling of Contextual Information in Knowledge Graphs of Diagnostic Reports. SWH@ISWC (2019)
Tim A. Green, Chi-Ren Shyu
Developing a Taxonomy of Online Medical Calculators for Assessing Automatability and Clinical Efficiency Improvements. MedInfo (2019)
Yan Zhuang, Lincoln Sheets, Zonyin Shae, Yin-Wu Chen, Jeffrey J. P. Tsai, Chi-Ren Shyu
Applying Blockchain Technology to Enhance Clinical Trial Recruitment. AMIA (2019)
Saif S. Khairat, Timothy L. Haithcoat, Songzi Liu, Tanzila Zaman, Barbara Edson, Robert Gianforcaro, Chi-Ren Shyu
Advancing health equity and access using telemedicine: a geospatial assessment. J. Am. Medical Informatics Assoc. 26 (8-9) (2019)
Yu Li, Carla Allen, Chi-Ren Shyu
Quantifying and understanding the differences in visual activities with contrast subsequences. ETRA (2019)
Yan Zhuang, Lincoln Sheets, Zonyin Shae, Jeffrey J. P. Tsai, Chi-Ren Shyu
Applying Blockchain Technology for Health Information Exchange and Persistent Monitoring for Clinical Trials. AMIA (2018)
Matthew Spencer, Nicole Takahashi, Sounak Chakraborty, Judith Miles, Chi-Ren Shyu
Heritable genotype contrast mining reveals novel gene associations specific to autism subgroups. J. Biomed. Informatics 77 (2018)
Timothy L. Haithcoat, Chi-Ren Shyu
Leveraging Location to Integrate and Access Information for Analyzing Health Context. AMIA (2018)
Yinmiao Ma, Danlu Liu, Grant J. Scott, Jeffrey Uhlmann, Chi-Ren Shyu
In-Memory Distributed Indexing for Large-Scale Media Data Retrieval. ISM (2017)
Matthew Spencer, Jacob Gotberg, Chi-Ren Shyu
Quasi-palindrome effects on DNA sequence evolution. BIBM (2017)
Michael A. Phinney, Yan Zhuang, Sean Lander, Lincoln Sheets, Jerry C. Parker, Chi-Ren Shyu
Contrast Mining for Pattern Discovery and Descriptive Analytics to Tailor Sub-Groups of Patients Using Big Data Solutions. MedInfo (2017)
Timothy L. Haithcoat, Chi-Ren Shyu
Geospatial health context table. BIBM (2017)
Murugesan Raju, Danlu Liu, Frederick W. Fraunfelder, Chi-Ren Shyu
Discovering multifactorial associations with the development of age-related cataract using contrast mining. BIBM (2017)
Lincoln Sheets, Gregory F. Petroski, Yan Zhuang, Michael Phinney, Bin Ge, Jerry C. Parker, Chi-Ren Shyu
Combining Contrast Mining with Logistic Regression To Predict Healthcare Utilization in a Managed Care Population. Appl. Clin. Inform. 8 (02) (2017)
William Baskett, Matthew Spencer, Chi-Ren Shyu
Efficient GPU-accelerated extraction of imperfect inverted repeats from DNA sequences. BIBM (2017)
Tim A. Green, Michael A. Phinney, Chi-Ren Shyu
Automatic Workflow Extraction Using Sequential Pattern Mining and Electronic Medical Record Usage Data. AMIA (2016)
Nicholas R. Smith, Luis A. Rivera, Maria Dietrich, Chi-Ren Shyu, Matthew P. Page, Guilherme N. DeSouza
Detection of Simulated Vocal Dysfunctions Using Complex sEMG Patterns. IEEE J. Biomed. Health Informatics 20 (3) (2016)
William Baskett, Matthew Spencer, Chi-Ren Shyu
Large scale extraction of perfect and imperfect DNA palindromes using in-memory computing. BIBM (2016)
Hongfei Cao, Michael Phinney, Devin Petersohn, Benjamin Merideth, Chi-Ren Shyu
Mining large-scale repetitive sequences in a MapReduce setting. Int. J. Data Min. Bioinform. 14 (3) (2016)
Matthew Spencer, Chi-Ren Shyu
Contrasting Autism Subgroup Genotypes Using Frequent Pattern Mining. AMIA (2016)
Pericles S. Giannaris, Zainab Al-Taie, Nattaphon Thanintorn, Ilker Ersoy, Chi-Ren Shyu, Richard D. Hammer, Dmitriy Shin
RDF-Based Method to Uncover Implicit Health Communication Episodes from Unstructured Healthcare Data. AMIA (2016)
Hongfei Cao, Yu Li, Carla M. Allen, Michael A. Phinney, Chi-Ren Shyu
Visual Reasoning Indexing and Retrieval Using In-Memory Computing. Int. J. Semantic Comput. 10 (3) (2016)
Chi-Ren Shyu
Semi-hypothesis guided exploratory analysis for biomedical applications. BIBM (2016)
Michael Phinney, Sean Lander, Matthew Spencer, Chi-Ren Shyu
Cartesian Operations on Distributed Datasets Using Virtual Partitioning. BigDataService (2016)
Xingyan Kuang, Andi Dhroso, Jing Ginger Han, Chi-Ren Shyu, Dmitry Korkin
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. Database J. Biol. Databases Curation 2016 (2016)
Hongfei Cao, Yu Li, Carla M. Allen, Michael A. Phinney, Chi-Ren Shyu
Visual Reasoning Indexing and Retrieval Using In-memory Computing. BigMM (2016)
Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu
An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (2) (2015)
Devin Petersohn, Matthew Spencer, Alex Fratila, Chi-Ren Shyu
Large scale multi-species palindrome study using distributed in-memory computing. BIBM (2015)
Lawrence Wing-Chi Chan, Ying Liu, Tao Chan, Helen K. W. Law, S. C. Cesar Wong, Andy Yeung, K. F. Lo, S. W. Yeung, K. Y. Kwok, William Chan, Thomas Lau, Chi-Ren Shyu
PubMed-supported clinical term weighting approach for improving inter-patient similarity measure in diagnosis prediction. BMC Medical Informatics Decis. Mak. 15 (2015)
Lawrence Wing-Chi Chan, Bin Pang, Chi-Ren Shyu, Tao Chan, Pek-Lan Khong
Genetic algorithm supported by graphical processing unit improves the exploration of effective connectivity in functional brain imaging. Frontiers Comput. Neurosci. 9 (2015)
Lincoln Sheets, Michael A. Phinney, Sean Lander, Jerry C. Parker, Chi-Ren Shyu
Data Mining to Predict Healthcare Utilization in Managed Care Patients. AMIA (2015)
Tim A. Green, Chi-Ren Shyu
Integrated Clinical Decision Support Systems: Systematic Review and Classification of Online Medical Calculators. AMIA (2015)
Nicholas R. Smith, Teekayu Klongtruagrok, Guilherme N. DeSouza, Chi-Ren Shyu, Maria Dietrich, Matthew P. Page
Non-invasive ambulatory monitoring of complex sEMG patterns and its potential application in the detection of vocal dysfunctions. Healthcom (2014)
Hongfei Cao, Michael Phinney, Devin Petersohn, Benjamin Merideth, Chi-Ren Shyu
MRSMRS: Mining repetitive sequences in a MapReduce setting. BIBM (2014)
Nan Zhao, Jing Ginger Han, Chi-Ren Shyu, Dmitry Korkin
Determining Effects of Non-synonymous SNPs on Protein-Protein Interactions using Supervised and Semi-supervised Learning. PLoS Comput. Biol. 10 (5) (2014)
Dmitriy Shin, Gerald C. Arthur, Mihail Popescu, Dmitry Korkin, Chi-Ren Shyu
Uncovering influence links in molecular knowledge networks to streamline personalized medicine. J. Biomed. Informatics 52 (2014)
Adrian S. Barb, Roy B. Clariana, Chi-Ren Shyu
Applications of PathFinder Network Scaling for Improving the Ranking of Satellite Images. IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens. 6 (3) (2013)
Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu
PBSalign: Sequence-independent local alignment of protein binding sites. BIBM (2013)
Hongfei Cao, Jing Ginger Han, Chi-Ren Shyu
Object behavior mining from mitochondiral shape databases for degenerated nerve disease studies. BIBM (2013)
Guannan Lu, Guilherme N. DeSouza, Jane Armer, Blake Anderson, Chi-Ren Shyu
A system for limb-volume measurement using 3D models from an infrared depth sensor. CICARE (2013)
Lawrence Wing-Chi Chan, Bin Pang, Chi-Ren Shyu, Tao Chan, Pek-Lan Khong
Fast GPU Algorithm for Analyzing Effective Connectivity in Functional Brain Imaging. ICONS (2013)
Mirna Becevic, Blake Anderson, Jing Ginger Han, E. Rachel Mutrux, Lanis Hicks, Karen Edison, Chi-Ren Shyu
TeleMDID: Mobile technology applications for interactive diagnoses in teledermatology clinics. Healthcom (2013)
Michael Phinney, Hongfei Cao, Andi Dhroso, Chi-Ren Shyu
Mining repetitive sequences using a big data ecosystem. BIBM (2013)
Guannan Lu, Guilherme N. DeSouza, Jane Armer, Chi-Ren Shyu
Comparing limb-volume measurement techniques: 3D models from an infrared depth sensor versus water displacement. Healthcom (2013)
Marius Petruc, Mihail Popescu, John L. Fresen, Dmitriy Shin, Chi-Ren Shyu
Quantifying the quality of imaging interpretations. AMIA (2012)
Bin Pang, Nan Zhao, Dmitry Korkin, Chi-Ren Shyu
Fast protein binding site comparisons using visual words representation. Bioinform. 28 (10) (2012)
Xingyan Kuang, Jing Ginger Han, Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin
DOMMINO: a database of macromolecular interactions. Nucleic Acids Res. 40 (Database-Issue) (2012)
Matthew N. Klaric, Grant J. Scott, Chi-Ren Shyu
Multi-Index Multi-Object Content-Based Retrieval. IEEE Trans. Geosci. Remote. Sens. 50 (10) (2012)
Xin Wang, Sanda Erdelez, Carla Allen, Blake Anderson, Hongfei Cao, Chi-Ren Shyu
Role of domain knowledge in developing user-centered medical-image indexing. J. Assoc. Inf. Sci. Technol. 63 (2) (2012)
Christine Shuyu Xu, Blake Anderson, Jane Armer, Chi-Ren Shyu
Improving disease management through a mobile application for lymphedema patients. Healthcom (2012)
Adrian S. Barb, Chi-Ren Shyu
Associative semantic ranking of satellite images using PathFinder Network Scaling ensemble methods. IGARSS (2012)
Jing Han, Xin Wang, Blake Anderson, Jonathan Dyer, Chi-Ren Shyu
A Study of Dermatological Image Search, Archive, and Use Behaviors. AMIA (2012)
Bin Pang, Xingyan Kuang, Nan Zhao, Dmitry Korkin, Chi-Ren Shyu
PBSword: a web server for searching similar protein-protein binding sites. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Jason M. Green, Jaturon Harnsomburana, Mary L. Schaeffer, Carolyn J. Lawrence, Chi-Ren Shyu
Multi-source and ontology-based retrieval engine for maize mutant phenotypes. Database J. Biol. Databases Curation 2011 (2011)
Jaturon Harnsomburana, Jason M. Green, Adrian S. Barb, Mary L. Schaeffer, Leszek Vincent, Chi-Ren Shyu
Computable visually observed phenotype ontological framework for plants. BMC Bioinform. 12 (2011)
Xin Wang, Sanda Erdelez, Yunhui Lu, Carla Allen, Blake Anderson, Hongfei Cao, Chi-Ren Shyu
Search tactics for medical image retrieval. ASIST (2011)
Lawrence Wing-Chi Chan, Ying Liu, Chi-Ren Shyu, Iris F. F. Benzie
A SNOMED supported ontological vector model for subclinical disorder detection using EHR similarity. Eng. Appl. Artif. Intell. 24 (8) (2011)
Grant J. Scott, Matthew N. Klaric, Curt H. Davis, Chi-Ren Shyu
Entropy-Balanced Bitmap Tree for Shape-Based Object Retrieval From Large-Scale Satellite Imagery Databases. IEEE Trans. Geosci. Remote. Sens. 49 (5) (2011)
Xin Wang, Sanda Erdelez, Carla Allen, Blake Anderson, Hongfei Cao, Chi-Ren Shyu
Medical image describing behavior: a comparison between an expert and novice. iConference (2011)
Adrian S. Barb, Chi-Ren Shyu
Visual information mining and ranking using graded relevance assessments in satellite image databases. IGARSS (2010)
Adrian S. Barb, Chi-Ren Shyu
Visual-Semantic Modeling in Content-Based Geospatial Information Retrieval Using Associative Mining Techniques. IEEE Geosci. Remote. Sens. Lett. 7 (1) (2010)
Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin
An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches. BIBM (2010)
Jing Han, Dmitriy V. Shin, Gerald L. Arthur, Chi-Ren Shyu
Multi-resolution tile-based follicle detection using color and textural information of follicular lymphoma IHC slides. BIBM Workshops (2010)
Chi-Ren Shyu, Bin Pang, Pin-Hao Chi, Nan Zhao, Dmitry Korkin, Dong Xu
ProteinDBS v2.0: a web server for global and local protein structure search. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Matt Klaric, Grant J. Scott, Chi-Ren Shyu
Progressive spatial clustering of content-based satellite imagery retrieval results. IGARSS (2010)
Pin-Hao Chi, Bin Pang, Dmitry Korkin, Chi-Ren Shyu
Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments. Bioinform. 25 (19) (2009)
Ying Liu, Lawrence Wing-Chi Chan, Chi-Ren Shyu, Ying Liu
Editorial for the special issue of knowledge discovery and management in biomedical information systems. Inf. Syst. Frontiers 11 (4) (2009)
Laritza M. Taft, R. Scott Evans, Chi-Ren Shyu, Marlene J. Egger, Nitesh V. Chawla, Joyce A. Mitchell, Sidney N. Thornton, Bruce E. Bray, Michael W. Varner
Countering imbalanced datasets to improve adverse drug event predictive models in labor and delivery. J. Biomed. Informatics 42 (2) (2009)
Adrian S. Barb, Chi-Ren Shyu
Ontology Driven Content Mining and Semantic Queries for Satellite Image Databases. IGARSS (3) (2008)
Ozy Sjahputera, Curt H. Davis, Brian C. Claywell, Nicholas J. Hudson, James M. Keller, Michael G. Vincent, Yonghong Li, Matthew N. Klaric, Chi-Ren Shyu
GeoCDX: An Automated Change Detection & Exploitation System for High Resolution Satelite Imagery. IGARSS (5) (2008)
Wu He, Sanda Erdelez, Feng-Kwei Wang, Chi-Ren Shyu
The effects of conceptual description and search practice on users' mental models and information seeking in a case-based reasoning retrieval system. Inf. Process. Manag. 44 (1) (2008)
Chi-Ren Shyu, Jaturon Harnsomburana, Jason M. Green, Adrian S. Barb, Toni Kazic, Mary L. Schaeffer, Edward H. Coe
Searching and Mining Visually Observed Phenotypes of maize Mutants. J. Bioinform. Comput. Biol. 5 (6) (2007)
Chi-Ren Shyu, Jason M. Green, Daniel Pak-Kong Lun, Toni Kazic, Mary L. Schaeffer, Ed Coe
Image Analysis for Mapping Immeasurable Phenotypes in Maize [Life Sciences]. IEEE Signal Process. Mag. 24 (3) (2007)
Chi-Ren Shyu, Matthew N. Klaric, Grant J. Scott, Adrian S. Barb, Curt H. Davis, Kannappan Palaniappan
GeoIRIS: Geospatial Information Retrieval and Indexing System - Content Mining, Semantics Modeling, and Complex Queries. IEEE Trans. Geosci. Remote. Sens. 45 (4) (2007)
Adrian S. Barb, Chi-Ren Shyu
User-specific semantics for modeling content-based geospatial knowledge. IGARSS (2007)
Grant J. Scott, Chi-Ren Shyu
Knowledge-Driven Multidimensional Indexing Structure for Biomedical Media Database Retrieval. IEEE Trans. Inf. Technol. Biomed. 11 (3) (2007)
Matthew N. Klaric, Grant J. Scott, Chi-Ren Shyu
Mining Visual Associations from User Feedback for Weighting Multiple Indexes in Geospatial Image Retrieval. IGARSS (2006)
Pin-Hao Chi, Chi-Ren Shyu, Dong Xu
A fast SCOP fold classification system using content-based E-Predict algorithm. BMC Bioinform. 7 (2006)
Matthew Klaric, Grant J. Scott, Chi-Ren Shyu, Curt H. Davis, Kannappan Palaniappan
A Framework for Geospatial Satellite Imagery Retrieval Systems. IGARSS (2006)
Brian C. Claywell, Curt H. Davis, Chi-Ren Shyu
Fusion of Spectral and Spatial Information for Automated Change Detection in High Resolution Satellite Imagery. IGARSS (2006)
Tetsuya Kobayashi, Chi-Ren Shyu
Representing Clinical Questions by Semantic Type for Better Classification. AMIA (2006)
Pin-Hao Chi, Chi-Ren Shyu
Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices. APBC (2006)
Jeff Reneker, Chi-Ren Shyu
Applying Sequential Forward Floating Selection to Protein Structure Prediction with a Study of HIV-1 RP. AMIA (2006)

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Publication Activity (10 Years)

Top Topics

Top Venues

Chi-Ren Shyu