PBSalign: Sequence-independent local alignment of protein binding sites.
Bin PangDavid SchlessmanXingyan KuangNan ZhaoDaniel ShyuDmitry KorkinChi-Ren ShyuPublished in: BIBM (2013)
Keyphrases
- sequence alignment
- binding sites
- biological sequences
- sequence data
- gene expression
- dna sequences
- dna binding
- transcription factors
- motif discovery
- protein protein
- statistical significance
- sequence analysis
- influenza virus
- transcription factor binding sites
- regulatory elements
- sequence databases
- protein sequences
- protein interaction
- pairwise
- genome sequences
- protein structure prediction
- amino acids
- drosophila melanogaster
- protein families
- psi blast
- machine learning
- protein structure