An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites.
Bin PangDavid SchlessmanXingyan KuangNan ZhaoDaniel ShyuDmitry KorkinChi-Ren ShyuPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2015)
Keyphrases
- sequence alignment
- binding sites
- biological sequences
- dna binding
- motif discovery
- gene expression
- dna sequences
- transcription factors
- sequence data
- protein protein
- transcription factor binding sites
- sequence analysis
- sequence databases
- statistical significance
- influenza virus
- protein families
- protein sequences
- pairwise
- amino acids
- regulatory elements
- drosophila melanogaster
- microarray
- biological processes
- gene regulation
- genome sequences
- protein interaction
- protein structure
- statistically significant