Oliver Kohlbacher

ORCID

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 39

Top Venues

Publications

Eleftheria Kontou, Axel Walter, Oliver Alka, Julianus Pfeuffer, Timo Sachsenberg, Omkar S. Mohite, Matin Nuhamunada, Oliver Kohlbacher, Tilmann Weber
UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis. J. Cheminformatics 15 (1) (2023)
Mirjam Figaschewski, Bilge Sürün, Thorsten Tiede, Oliver Kohlbacher
The personalized cancer network explorer (PeCaX) as a visual analytics tool to support molecular tumor boards. BMC Bioinform. 24 (1) (2023)
Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. CoRDI (2023)
Hans-Ulrich Prokosch, Thomas Bahls, Martin Bialke, Jürgen Eils, Christian Fegeler, Julian Gründner, Birger Haarbrandt, Christopher Hampf, Wolfgang Hoffmann, Hauke Hund, Marvin O. Kampf, Lorenz A. Kapsner, Piotr Kasprzak, Oliver Kohlbacher, Dagmar Krefting, Jonathan Mang, Michael Marschollek, Sebastian Mate, Armin Müller, Fabian Prasser, Julian Sass, Sebastian C. Semler, Holger Stenzhorn, Sylvia Thun, Sven Zenker, Roland Eils
The COVID-19 Data Exchange Platform of the German University Medicine. MIE (2022)
Marius de Arruda Botelho Herr, Michael Graf, Peter Placzek, Florian König, Felix Bötte, Tyra Stickel, David Hieber, Lukas Zimmermann, Michael Slupina, Christopher Mohr, Stephanie Biergans, Mete Akgün, Nico Pfeifer, Oliver Kohlbacher
Bringing the Algorithms to the Data - Secure Distributed Medical Analytics using the Personal Health Train (PHT-meDIC). CoRR (2022)
Mete Akgün, Nico Pfeifer, Oliver Kohlbacher
Efficient privacy-preserving whole-genome variant queries. Bioinform. 38 (8) (2022)
Sebastian Winkler, Ivana Winkler, Mirjam Figaschewski, Thorsten Tiede, Alfred Nordheim, Oliver Kohlbacher
De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet. BMC Bioinform. 23 (1) (2022)
Mete Akgün, Ali Burak Ünal, Bekir Ergüner, Nico Pfeifer, Oliver Kohlbacher
Identifying disease-causing mutations with privacy protection. Bioinform. 36 (21) (2021)
Lars Christoph Gleim, Md. Rezaul Karim, Lukas Zimmermann, Oliver Kohlbacher, Holger Stenzhorn, Stefan Decker, Oya Beyan
Enabling ad-hoc reuse of private data repositories through schema extraction. J. Biomed. Semant. 11 (1) (2020)
Bilge Sürün, Charlotta P. I. Schärfe, Mathew R. Divine, Julian Heinrich, Nora C. Toussaint, Lukas Zimmermann, Janina Beha, Oliver Kohlbacher
ClinVAP: a reporting strategy from variants to therapeutic options. Bioinform. 36 (7) (2020)
Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker
Distributed Analytics on Sensitive Medical Data: The Personal Health Train. Data Intell. 2 (1-2) (2020)
Thorsten Tiede, Oliver Kohlbacher
Biological Network Knowledge in Molecular Tumor Boards. AMIA (2019)
Maximilian Hanussek, Felix Bartusch, Jens Krüger, Oliver Kohlbacher
BOOTABLE: Bioinformatics Benchmark Tool Suite. CCGRID (2019)
Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn A. Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Research 8 (2019)
Lara Schneider, Tim Kehl, Kristina Thedinga, Nadja Liddy Grammes, Christina Backes, Christopher Mohr, Benjamin Schubert, Kerstin Lenhof, Nico Gerstner, Andreas Daniel Hartkopf, Markus Wallwiener, Oliver Kohlbacher, Andreas Keller, Eckart Meese, Norbert M. Graf, Hans-Peter Lenhof
ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification. Bioinform. 35 (24) (2019)
Felix Bartusch, Maximilian Hanussek, Jens Krüger, Oliver Kohlbacher
Reproducible Scientific Workflows for High Performance and Cloud Computing. CCGRID (2019)
Marc Halfmann, Holger Stenzhorn, Peter Gerjets, Oliver Kohlbacher, Uwe Oestermeier
User-Driven Development of a Novel Molecular Tumor Board Support Tool. DILS (2018)
Md. Rezaul Karim, Binh-Phi Nguyen, Lukas Zimmermann, Toralf Kirsten, Matthias Löbe, Frank A. Meineke, Holger Stenzhorn, Oliver Kohlbacher, Stefan Decker, Oya Deniz Beyan
A distributed analytics platform to execute FHIR based phenotyping algorithms. SWAT4LS (2018)
Andreas Friedrich, Luis de la Garza, Oliver Kohlbacher, Sven Nahnsen
Interactive Visualization for Large-Scale Multi-factorial Research Designs. DILS (2018)
Benjamin Schubert, Charlotta Schärfe, Pierre Dönnes, Thomas A. Hopf, Debora S. Marks, Oliver Kohlbacher
Population-specific design of de-immunized protein biotherapeutics. PLoS Comput. Biol. 14 (3) (2018)
Maximilian Hanussek, Felix Bartusch, Jens Krüger, Oliver Kohlbacher
Efficient Mass Spectra Prediction through Container Orchestration with a Scientific Workflow. IWSG (2017)
Benjamin Schubert, Charlotta Schärfe, Pierre Dönnes, Thomas A. Hopf, Debora S. Marks, Oliver Kohlbacher
Population-specific design of de-immunized protein biotherapeutics. CoRR (2017)
Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jimenez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck
The future of metabolomics in ELIXIR. F1000Research 6 (2017)
Florian Heimgaertner, Stefan Hettich, Oliver Kohlbacher, Michael Menth
Scaling home automation to public buildings: A distributed multiuser setup for OpenHAB 2. GIoTS (2017)
Luis de la Garza, Fabian Aicheler, Oliver Kohlbacher
From the desktop to the grid and cloud: conversion of KNIME workflows to WS-PGRADE. PeerJ Prepr. 5 (2017)
Marc G. Chevrette, Fabian Aicheler, Oliver Kohlbacher, Cameron R. Currie, Marnix H. Medema
SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria. Bioinform. 33 (20) (2017)
Christopher Mohr, Andreas Friedrich, David Wojnar, Erhan Kenar, Aydin Can Polatkan, Marius Cosmin Codrea, Stefan Czemmel, Oliver Kohlbacher, Sven Nahnsen
qPortal - A science gateway for biomedical applications. PeerJ Prepr. 5 (2017)
Benjamin Schubert, Luis de la Garza, Christopher Mohr, Mathias Walzer, Oliver Kohlbacher
ImmunoNodes - graphical development of complex immunoinformatics workflows. BMC Bioinform. 18 (1) (2017)
Sabine C. Mueller, Christina Backes, Alexander Greß, Nina Baumgarten, Olga V. Kalinina, Andreas Moll, Oliver Kohlbacher, Eckart Meese, Andreas Keller
BALL-SNPgp - from genetic variants toward computational diagnostics. Bioinform. 32 (12) (2016)
Lisa M. Breckels, Sean B. Holden, David Wojnar, Claire M. Mulvey, Andy Christoforou, Arnoud Groen, Matthew W. B. Trotter, Oliver Kohlbacher, Kathryn S. Lilley, Laurent Gatto
Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics. PLoS Comput. Biol. 12 (5) (2016)
Benjamin Schubert, Mathias Walzer, Hans-Philipp Brachvogel, András Szolek, Christopher Mohr, Oliver Kohlbacher
FRED 2: an immunoinformatics framework for Python. Bioinform. 32 (13) (2016)
Luis de la Garza, Fabian Aicheler, Oliver Kohlbacher
From the Desktop to the Grid and Cloud: Conversion of KNIME Workflows to WS-PGRADE. IWSG (2016)
Jens Krüger, Oliver Kohlbacher
Containerization and wrapping of a mass spectra prediction workflow. PeerJ Prepr. 4 (2016)
Luis de la Garza, Johannes Veit, András Szolek, Marc Röttig, Stephan Aiche, Sandra Gesing, Knut Reinert, Oliver Kohlbacher
From the desktop to the grid: scalable bioinformatics via workflow conversion. BMC Bioinform. 17 (2016)
Andreas Gerasch, Jan Küntzer, Peter Niermann, Daniel Stöckel, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof
Network-based interactive navigation and analysis of large biological datasets. it Inf. Technol. 57 (1) (2015)
Rudolf Aebersold, Oliver Kohlbacher, Olga Vitek
Computational Mass Spectrometry (Dagstuhl Seminar 15351). Dagstuhl Reports 5 (8) (2015)
Anna Katharina Hildebrandt, Daniel Stöckel, Nina M. Fischer, Luis de la Garza, Jens Krüger, Stefan Nickels, Marc Röttig, Charlotta Schärfe, Marcel Schumann, Philipp Thiel, Hans-Peter Lenhof, Oliver Kohlbacher, Andreas Hildebrandt
ballaxy: web services for structural bioinformatics. Bioinform. 31 (1) (2015)
Ramanuja Simha, Sebastian Briesemeister, Oliver Kohlbacher, Hagit Shatkay
Protein (multi-)location prediction: utilizing interdependencies via a generative model. Bioinform. 31 (12) (2015)
Benjamin Schubert, Hans-Philipp Brachvogel, Christopher Jürges, Oliver Kohlbacher
EpiToolKit - a web-based workbench for vaccine design. Bioinform. 31 (13) (2015)
Philipp Thiel, Lisa Sach-Peltason, Christian Ottmann, Oliver Kohlbacher
Blocked Inverted Indices for Exact Clustering of Large Chemical Spaces. J. Chem. Inf. Model. 54 (9) (2014)
Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher
Rebuilding KEGG Maps: Algorithms and Benefits. PacificVis (2014)
András Szolek, Benjamin Schubert, Christopher Mohr, Marc Sturm, Magdalena Feldhahn, Oliver Kohlbacher
OptiType: precision HLA typing from next-generation sequencing data. Bioinform. 30 (23) (2014)
Luis de la Garza, Jens Krüger, Charlotta Schärfe, Marc Röttig, Stephan Aiche, Knut Reinert, Oliver Kohlbacher
From the Desktop to the Grid: conversion of KNIME Workflows to gUSE. IWSG (2013)
Lars Packschies, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ulrich Lang, Ralph Müller-Pfefferkorn, Patrick Schäfer, Tobias Schlemmer, Thomas Steinke, Klaus-Dieter Warzecha, Andreas Zink
The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment. J. Cheminformatics 5 (S-1) (2013)
Oliver Kohlbacher, Falk Schreiber, Matthew O. Ward
Multivariate Networks in the Life Sciences. Multivariate Network Visualization (2013)
Philipp Thiel, Lisa Peltason, Christian Ottmann, Oliver Kohlbacher
Deterministic clustering of the available chemical space. J. Cheminformatics 5 (S-1) (2013)
Jiri Novák, Timo Sachsenberg, David Hoksza, Tomás Skopal, Oliver Kohlbacher
On Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, Efficiency of Precursor Mass Filter and Dealing with Variable Modifications. J. Integr. Bioinform. 10 (3) (2013)
Jonathan C. Roberts, Jing Yang, Oliver Kohlbacher, Matthew O. Ward, Michelle X. Zhou
Novel Visual Metaphors for Multivariate Networks. Multivariate Network Visualization (2013)
Ruedi Aebersold, Oliver Kohlbacher, Olga Vitek
Computational Mass Spectrometry (Dagstuhl Seminar 13491). Dagstuhl Reports 3 (12) (2013)
Jiri Novák, Timo Sachsenberg, David Hoksza, Tomás Skopal, Oliver Kohlbacher
A Statistical Comparison of SimTandem with State-of-the-Art Peptide Identification Tools. PACBB (2013)
Charlotta Schärfe, Joachim Taeger, Peggy Reuter, Nina M. Fischer, Jens Krüger, Bernd Wissinger, Oliver Kohlbacher
Development of a pharmacorphore model for pharmacological chaperones targeting mutant trafficking-deficient CNG channels. J. Cheminformatics 5 (S-1) (2013)
Sonja Herres-Pawlis, Georg Birkenheuer, André Brinkmann, Sandra Gesing, Richard Grunzke, René Jäkel, Oliver Kohlbacher, Jens Krüger, Ines dos Santos Vieira
Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway. HealthGrid (2012)
Sven Nahnsen, Oliver Kohlbacher
In silico design of targeted SRM-based experiments. BMC Bioinform. 13 (S-16) (2012)
Oliver Kohlbacher
CADDSuite - a workflow-enabled suite of open-source tools for drug discovery. J. Cheminformatics 4 (S-1) (2012)
Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Ákos Balaskó, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Péter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics. J. Grid Comput. 10 (4) (2012)
Magdalena Feldhahn, Karin Schilbach, Pierre Dönnes, Hans-Georg Rammensee, Benjamin Schubert, Oliver Kohlbacher
miHA-match: computational detection of tissue-specific minor histocompatibility antigens. BCB (2012)
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment. J. Cheminformatics 4 (S-1) (2012)
Marcel Schumann, Marc Röttig, Nina M. Fischer, Oliver Kohlbacher
A framework and workflow system for virtual screening and molecular docking. J. Cheminformatics 3 (S-1) (2011)
Chun-Wei Tung, Matthias Ziehm, Andreas Kämper, Oliver Kohlbacher, Shinn-Ying Ho
POPISK: T-cell reactivity prediction using support vector machines and string kernels. BMC Bioinform. 12 (2011)
Nora C. Toussaint, Magdalena Feldhahn, Matthias Ziehm, Stefan Stevanovic, Oliver Kohlbacher
T-cell epitope prediction based on self-tolerance. BCB (2011)
Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Oliver Kohlbacher, Nico Kruber, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Sonja Herres-Pawlis, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
Molecular simulation grid. J. Cheminformatics 3 (S-1) (2011)
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
MoSGrid - a molecular simulation grid as a new tool in computational chemistry, biology and material science. J. Cheminformatics 3 (S-1) (2011)
Sandra Gesing, Richard Grunzke, Ákos Balaskó, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Péter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher
Granular Security for a Science Gateway in Structural Bioinformatics. IWSG-Life (2011)
Marc Röttig, Marnix H. Medema, Kai Blin, Tilmann Weber, Christian Rausch, Oliver Kohlbacher
NRPSpredictor2 - a web server for predicting NRPS adenylation domain specificity. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Sandra Gesing, Jano I. van Hemert, Péter Kacsuk, Oliver Kohlbacher
Special Issue: Portals for life sciences - Providing intuitive access to bioinformatic tools. Concurr. Comput. Pract. Exp. 23 (3) (2011)
Georg Birkenheuer, Sebastian Breuers, André Brinkmann, Dirk Blunk, Gregor Fels, Sandra Gesing, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Lars Packschies
Grid-Workflows in Molecular Science. Software Engineering (Workshops) (2010)
Christian Widmer, Nora C. Toussaint, Yasemin Altun, Oliver Kohlbacher, Gunnar Rätsch
Novel Machine Learning Methods for MHC Class I Binding Prediction. PRIB (2010)
Andreas Hildebrandt, Anna Katharina Dehof, Alexander Rurainski, Andreas Bertsch, Marcel Schumann, Nora C. Toussaint, Andreas Moll, Daniel Stöckel, Stefan Nickels, Sabine C. Mueller, Hans-Peter Lenhof, Oliver Kohlbacher
BALL - biochemical algorithms library 1.3. BMC Bioinform. 11 (2010)
Sandra Gesing, Jano I. van Hemert, Jos Koetsier, Andreas Bertsch, Oliver Kohlbacher
TOPP goes Rapid The OpenMS Proteomics Pipeline in a Grid-Enabled Web Portal. CCGRID (2010)
Marc Röttig, Christian Rausch, Oliver Kohlbacher
Combining Structure and Sequence Information Allows Automated Prediction of Substrate Specificities within Enzyme Families. PLoS Comput. Biol. 6 (1) (2010)
Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
Going from where to why - interpretable prediction of protein subcellular localization. Bioinform. 26 (9) (2010)
Nora C. Toussaint, Christian Widmer, Oliver Kohlbacher, Gunnar Rätsch
Exploiting physico-chemical properties in string kernels. BMC Bioinform. 11 (S-8) (2010)
Carsten Henneges, Marc Röttig, Oliver Kohlbacher, Andreas Zell
Graphlet Data Mining of Energetical Interaction Patterns in Protein 3D Structures. IJCCI (ICFC-ICNC) (2010)
Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
YLoc - an interpretable web server for predicting subcellular localization. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Nina M. Fischer, Wolfgang M. Schneider, Oliver Kohlbacher
Rescoring of docking poses using force field-based methods. J. Cheminformatics 2 (S-1) (2010)
Torsten Blum, Sebastian Briesemeister, Oliver Kohlbacher
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction. BMC Bioinform. 10 (2009)
Nora C. Toussaint, Oliver Kohlbacher
OptiTope - a web server for the selection of an optimal set of peptides for epitope-based vaccines. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Sebastian J. Schultheiß, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher, Gunnar Rätsch
KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. BMC Bioinform. 10 (S-13) (2009)
Sandra Gesing, Oliver Kohlbacher, Jano I. van Hemert
Portals for Life Sciences - a Brief Introduction. IWPLS (2009)
Magdalena Feldhahn, Pierre Dönnes, Philipp Thiel, Oliver Kohlbacher
FRED - a framework for T-cell epitope detection. Bioinform. 25 (20) (2009)
Mario Albrecht, Andreas Kerren, Karsten Klein, Oliver Kohlbacher, Petra Mutzel, Wolfgang Paul, Falk Schreiber, Michael Wybrow
On Open Problems in Biological Network Visualization. Graph Drawing (2009)
Sebastian J. Schultheiß, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher, Gunnar Rätsch
KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. Bioinform. 25 (16) (2009)
Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert
Integer Linear Programming in Computational Biology. Efficient Algorithms (2009)
Andreas Keller, Christina Backes, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. Bioinform. 25 (21) (2009)
Andreas Dräger, Marcel Kronfeld, Michael J. Ziller, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges, Oliver Kohlbacher, Andreas Zell
Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies. BMC Syst. Biol. 3 (2009)
Nico Pfeifer, Oliver Kohlbacher
Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles. WABI (2008)
Knut Reinert, Christian G. Huber, Kathrin Marcus, Michal Linial, Oliver Kohlbacher
08101 Abstracts Collection - Computational Proteomics. Computational Proteomics (2008)
Torsten Blum, Oliver Kohlbacher
Using Atom Mapping Rules for an Improved Detection of Relevant Routes in Weighted Metabolic Networks. J. Comput. Biol. 15 (6) (2008)
Ole Schulz-Trieglaff, Nico Pfeifer, Clemens Gröpl, Oliver Kohlbacher, Knut Reinert
LC-MSsim - a simulation software for liquid chromatography mass spectrometry data. BMC Bioinform. 9 (2008)
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
OpenMS - An open-source software framework for mass spectrometry. BMC Bioinform. 9 (2008)
Mario Albrecht, Alejandro Estrella-Balderrama, Markus Geyer, Carsten Gutwenger, Karsten Klein, Oliver Kohlbacher, Michael Schulz
08191 Working Group Summary - Visually Comparing a Set of Graphs. Graph Drawing with Applications to Bioinformatics and Social Sciences (2008)
Nora C. Toussaint, Pierre Dönnes, Oliver Kohlbacher
A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines. PLoS Comput. Biol. 4 (12) (2008)
Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinform. 9 (2008)
Wiebke Timm, Alexandra Scherbart, Sebastian Böcker, Oliver Kohlbacher, Tim W. Nattkemper
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinform. 9 (2008)
Andreas Kerzmann, Jan Fuhrmann, Oliver Kohlbacher, Dirk Neumann
BALLDock/SLICK: A New Method for Protein-Carbohydrate Docking. J. Chem. Inf. Model. 48 (8) (2008)
Torsten Blum, Oliver Kohlbacher
MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization. Bioinform. 24 (18) (2008)
Stephen P. Borgatti, Stephen G. Kobourov, Oliver Kohlbacher, Petra Mutzel
08191 Executive Summary - Graph Drawing with Applications to Bioinformatics and Social Sciences. Graph Drawing with Applications to Bioinformatics and Social Sciences (2008)
Magdalena Feldhahn, Philipp Thiel, Mathias M. Schuler, Nina Hillen, Stefan Stevanovic, Hans-Georg Rammensee, Oliver Kohlbacher
EpiToolKit - a web server for computational immunomics. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Stephen P. Borgatti, Stephen G. Kobourov, Oliver Kohlbacher, Petra Mutzel
08191 Abstracts Collection - Graph Drawing with Applications to Bioinformatics and Social Sciences. Graph Drawing with Applications to Bioinformatics and Social Sciences (2008)
Sebastian J. Schultheiß, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher, Gunnar Rätsch
KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences. German Conference on Bioinformatics (2008)

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Publication Activity (10 Years)

Top Topics

Top Venues

Oliver Kohlbacher