Ursula Kummer

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 4

Top Topics

High Throughput

Experimental Data

Top Venues

PLoS Comput. Biol.

BMC Syst. Biol.

Publications

Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. CoRDI (2023)
Benjamin D. Maier, Luis U. Aguilera, Sven Sahle, Pascal Mutz, Priyata Kalra, Christopher Dächert, Ralf Bartenschlager, Marco Binder, Ursula Kummer
Stochastic dynamics of Type-I interferon responses. PLoS Comput. Biol. 18 (10) (2022)
Pascal Holzheu, Ruth Großeholz, Ursula Kummer
Impact of explicit area scaling on kinetic models involving multiple compartments. BMC Bioinform. 22 (1) (2021)
Luis U. Aguilera, Christoph Zimmer, Ursula Kummer
A new efficient approach to fit stochastic models on the basis of high-throughput experimental data using a model of IRF7 gene expression as case study. BMC Syst. Biol. 11 (1) (2017)
Nadine Veith, Anna Feldman-Salit, Vlad Cojocaru, Stefan Henrich, Ursula Kummer, Rebecca C. Wade
Organism-Adapted Specificity of the Allosteric Regulation of Pyruvate Kinase in Lactic Acid Bacteria. PLoS Comput. Biol. 9 (7) (2013)
Irina Surovtsova, Natalia Simus, Katrin Hübner, Sven Sahle, Ursula Kummer
Simplification of biochemical models: a general approach based on the analysis of the impact of individual species and reactions on the systems dynamics. BMC Syst. Biol. 6 (2012)
Irina Surovtsova, Natalia Simus, Thomas Lorenz, Artjom König, Sven Sahle, Ursula Kummer
Accessible methods for the dynamic time-scale decomposition of biochemical systems. Bioinform. 25 (21) (2009)
Ann Zahle Andersen, Ana Lúcia Carvalho, Ana Rute Neves, Helena Santos, Ursula Kummer, Lars Folke Olsen
The metabolic pH response in Lactococcus lactis: An integrative experimental and modelling approach. Comput. Biol. Chem. 33 (1) (2009)
Jürgen Pahle, Anne K. Green, C. Jane Dixon, Ursula Kummer
Information transfer in signaling pathways: A study using coupled simulated and experimental data. BMC Bioinform. 9 (2008)
Andreas Weidemann, Stefan Richter, Matthias Stein, Sven Sahle, Ralph Gauges, Razif R. Gabdoulline, Irina Surovtsova, Nils Semmelrock, Bruno Besson, Isabel Rojas, Rebecca C. Wade, Ursula Kummer
SYCAMORE - a systems biology computational analysis and modeling research environment. Bioinform. 24 (12) (2008)
Ursula Kummer
Usage of Reaction Kinetics Data Stored in Databases - A Modeler's Point of View. Silico Biol. 7 (6) (2007)
Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer
COPASI - a COmplex PAthway SImulator. Bioinform. 22 (24) (2006)
Sven Sahle, Ralph Gauges, Jürgen Pahle, Natalia Simus, Ursula Kummer, Stefan Hoops, Christine Lee, Mudita Singhal, Liang Xu, Pedro Mendes
Simulation of biochemical networks using COPASI: a complex pathway simulator. WSC (2006)
Irina Surovtsova, Sven Sahle, Jürgen Pahle, Ursula Kummer
Approaches to complexity reduction in a systems biology research environment (SYCAMORE). WSC (2006)
Jürgen Zobeley, Dirk Lebiedz, Julia Kammerer, Anton Ishmurzin, Ursula Kummer
A New Time-Dependent Complexity Reduction Method for Biochemical Systems. Trans. Comp. Sys. Biology 1 (2005)
Katja Wegner, Ursula Kummer
A new dynamical layout algorithm for complex biochemical reaction networks. BMC Bioinform. 6 (2005)
Katja Wegner, Stephan Jansen, Stefan Wuchty, Ralph Gauges, Ursula Kummer
combAlign: A protein sequence comparison algorithm considering recombinations. Silico Biol. 4 (3) (2004)
Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinform. 19 (4) (2003)