Rebecca C. Wade

Publication Activity (10 Years)

Years Active: 1990-2023
Publications (10 Years): 7

Top Topics

Genome Sequencing

Computational Methods

Predicting Protein

Machine Learning

Top Venues

J. Chem. Inf. Model.

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Lucas G. Viviani, Daria B. Kokh, Rebecca C. Wade, Antonia T. do Amaral
Molecular Dynamics Simulations of the Human Ecto-5′-Nucleotidase (h-ecto-5′-NT, CD73): Insights into Protein Flexibility and Binding Site Dynamics. J. Chem. Inf. Model. 63 (15) (2023)
Ariane Nunes-Alves, Fabian Ormersbach, Rebecca C. Wade
Prediction of the Drug-Target Binding Kinetics for Flexible Proteins by Comparative Binding Energy Analysis. J. Chem. Inf. Model. 61 (7) (2021)
Jui-Hung Yuan, Sungho Bosco Han, Stefan Richter, Rebecca C. Wade, Daria B. Kokh
Druggability Assessment in TRAPP Using Machine Learning Approaches. J. Chem. Inf. Model. 60 (3) (2020)
Neil J. Bruce, Daniele Narzi, Daniel Trpevski, Siri Camee van Keulen, Anu G. Nair, Ursula Rothlisberger, Rebecca C. Wade, Paolo Carloni, Jeanette Hellgren Kotaleski
Regulation of adenylyl cyclase 5 in striatal neurons confers the ability to detect coincident neuromodulatory signals. PLoS Comput. Biol. 15 (10) (2019)
Neil J. Bruce, Gaurav K. Ganotra, Stefan Richter, Rebecca C. Wade
KBbox: A Toolbox of Computational Methods for Studying the Kinetics of Molecular Binding. J. Chem. Inf. Model. 59 (9) (2019)
Wiktoria Jedwabny, Joanna Panecka-Hofman, Edyta Dyguda-Kazimierowicz, Rebecca C. Wade, W. Andrzej Sokalski
Application of a simple quantum chemical approach to ligand fragment scoring for Trypanosoma brucei pteridine reductase 1 inhibition. J. Comput. Aided Mol. Des. 31 (8) (2017)
Antonia Stank, Daria B. Kokh, Max Horn, Elena Sizikova, Rebecca Neil, Joanna Panecka, Stefan Richter, Rebecca C. Wade
TRAPP webserver: predicting protein binding site flexibility and detecting transient binding pockets. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Michael Martinez, Neil J. Bruce, Julia Romanowska, Daria B. Kokh, Musa Ozboyaci, Xiaofeng Yu, Mehmet Ali Öztürk, Stefan Richter, Rebecca C. Wade
SDA 7: A modular and parallel implementation of the simulation of diffusional association software. J. Comput. Chem. 36 (21) (2015)
Nadinath B. Nillegoda, Janine Kirstein, Anna Szlachcic, Mykhaylo Berynskyy, Antonia Stank, Florian Stengel, Kristin Arnsburg, Xuechao Gao, Annika Scior, Ruedi Aebersold, D. Lys Guilbride, Rebecca C. Wade, Richard I. Morimoto, Matthias P. Mayer, Bernd Bukau
Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation. Nat. 524 (7564) (2015)
Xiaofeng Yu, Michael Martinez, Annika L. Gable, Jonathan C. Fuller, Neil J. Bruce, Stefan Richter, Rebecca C. Wade
webSDA: a web server to simulate macromolecular diffusional association. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Jonathan C. Fuller, Michael Martinez, Stefan Henrich, Antonia Stank, Stefan Richter, Rebecca C. Wade
LigDig: a web server for querying ligand-protein interactions. Bioinform. 31 (7) (2015)
Daria B. Kokh, Stefan Richter, Stefan Henrich, Paul Czodrowski, Friedrich Rippmann, Rebecca C. Wade
roteins. J. Chem. Inf. Model. 53 (5) (2013)
Nadine Veith, Anna Feldman-Salit, Vlad Cojocaru, Stefan Henrich, Ursula Kummer, Rebecca C. Wade
Organism-Adapted Specificity of the Allosteric Regulation of Pyruvate Kinase in Lactic Acid Bacteria. PLoS Comput. Biol. 9 (7) (2013)
Rebecca C. Wade
Targeting protein dynamics in drug design. J. Cheminformatics 5 (S-1) (2013)
Vlad Cojocaru, Kia Balali-Mood, Mark S. P. Sansom, Rebecca C. Wade
Structure and Dynamics of the Membrane-Bound Cytochrome P450 2C9. PLoS Comput. Biol. 7 (8) (2011)
Andreas Weidemann, Stefan Richter, Matthias Stein, Sven Sahle, Ralph Gauges, Razif R. Gabdoulline, Irina Surovtsova, Nils Semmelrock, Bruno Besson, Isabel Rojas, Rebecca C. Wade, Ursula Kummer
SYCAMORE - a systems biology computational analysis and modeling research environment. Bioinform. 24 (12) (2008)
Stefan Richter, Anne Wenzel, Matthias Stein, Razif R. Gabdoulline, Rebecca C. Wade
webPIPSA: a web server for the comparison of protein interaction properties. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Razif R. Gabdoulline, Matthias Stein, Rebecca C. Wade
qPIPSA: Relating enzymatic kinetic parameters and interaction fields. BMC Bioinform. 8 (2007)
Razif R. Gabdoulline, S. Ulbrich, Stefan Richter, Rebecca C. Wade
ProSAT2 - Protein Structure Annotation Server. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Giacomo Finocchiaro, Ting Wang, René Hoffmann, Aitor González, Rebecca C. Wade
DSMM: a Database of Simulated Molecular Motions. Nucleic Acids Res. 31 (1) (2003)
Razif R. Gabdoulline, Rebecca C. Wade, Dirk Walther
MolSurfer: a macromolecular interface navigator. Nucleic Acids Res. 31 (13) (2003)
Jan Kmunícek, Michal Bohác, Santos Luengo, Federico Gago, Rebecca C. Wade, Jirí Damborský
Comparative binding energy analysis of haloalkane dehalogenase substrates: Modelling of enzyme-substrate complexes by molecular docking and quantum mechanical calculations. J. Comput. Aided Mol. Des. 17 (5-6) (2003)
Branimir Bertosa, Biserka Kojic-Prodic, Rebecca C. Wade, Michael Ramek, Stavroula Piperaki, Anna Tsantili-Kakoulidou, Sanja Tomic
Values: Application to Auxins. J. Chem. Inf. Comput. Sci. 43 (5) (2003)
Razif R. Gabdoulline, René Hoffmann, Florian Leitner, Rebecca C. Wade
ProSAT: functional annotation of protein 3D structures. Bioinform. 19 (13) (2003)
Razif R. Gabdoulline, Aitor González, Rebecca C. Wade
3D modeling of macromolecular structures and reactions in the context of genomes. German Conference on Bioinformatics (2001)
Sanja Tomic, Razif R. Gabdoulline, Biserka Kojic-Prodic, Rebecca C. Wade
Classification of auxin plant hormones by interaction property similarity indices. J. Comput. Aided Mol. Des. 12 (1) (1998)
Volkhard Helms, Rebecca C. Wade
Free energies of hydration from thermodynamic integration: Comparison of molecular mechanics force fields and evaluation of calculation accuracy. J. Comput. Chem. 18 (4) (1997)
Rebecca C. Wade
Solvation of the active site of cytochrome P450-cam. J. Comput. Aided Mol. Des. 4 (2) (1990)